Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1219 ATGGCAGTGGGAGATGCATTTCTGTCTGCATTTCTTCAAGTGTTGTTTGACAGGTTGGCCTCACCTGAATTACTGAAAATTGCCCAAATATGGAGAGTTGATGTTGAACTAAAAAAGTTGAAAGGAACACTGCTGAAGATTCAGGCTGTGCTCAATGATGCTGAGTTGAAGCAAGTCTGGAATAATGCTGTGAGAATATGGCTGGAGGATCTTAAACACCTTGCTTATGATGTTGAGGATATAGTGGATGAATTTGAAATTGAAGCTCTGAGATGGAAATTGGAAGCAGAACCTCAATTTGACCCAACTCAGGTATGGCCTCTCATCCCTTTTAGAAGAAAGGATCTTGGTTTGAAGGAGAAAACTGAAAGAAACACATATGGAATCAGTCAAAGACCAGCCACAAGTTCTTTAGTCAACAAATCTCGGATTGTTGGTAGAGAGGCTGATAAACAGAAGCTAGTTGACTTGCTTCTCTCAAATGACACAAGTGAGGGTGAAGTCTGCAGAAATGGTGACAAGGTCTTTATAATCCCAGTTTCTGGTATGGGTGGCATTGGAAAGACGACGATTGCTCAGCTTGTTTACAATGAAGAGAGGGTCATTCAACAATTTGAACTGAAAGCCTGGGTTTGTGTGTCTGAAGAATTTGATCTGATGAGAGTGACAAGATCTATTCTTGAGTCCGCCACTGGGAGATCATCTGATCTTAAGGACCTGGGTCAGCTTCAAGTTAGTTTGAAGAAGGTGCTGAGAGGGAAAAGGTTTTTGATTGTCCTAGACAACGTATGGAATGAGAACTACAATAACTGGGATGATTTAATGGTTCCTTTAAGAGCTGGGGCACAAGGAAGTAAGGTTATAGTCACTACAAGAAGTGAAGCTGTTTCATTGATGGTCGGTAGCATTCCATCCTATAATCTGGACGGTTTAACGTATGAAGATTCAATTGGAAAGGAAATCGTGAAGAAGTGTGGACGTTTGCCTCTGGTTGCAAAGGCACTAGGAGGACTCTTGCGCAATAAAGTGCTTGATTCTGAATTGAGCTACTATCACCTTCCAGCACATTTAAAACCATGTTTTGCCTATTGTTCCATATTCCCAAAGGGCTATGAATTGGATAAGGAGAATTTAGTCCTACTATGGATGGCAGAAGGTTTTGTGCAGCAGAAACAAAAGAAGCAGATTGAAGACATAGGCAGAGAGTACTTTGATGAATTATTCTCAAGGTCATTCTTCCAAAAATCATGTAGCAATGCATCAAGCTTTGTAATGCATGATCTTATCAATGATTTAGCACGAAACATCTCTGGGGATATATCTTTCAGGTTGAATGATGCATCAGACATAAAAAGCTTGTGCAGAATTTCTGAGAAGCAAAGGTACTTCGCTTGCAGCCTACCGCATAAGGTCCAATCCAACTTATTCCCAGTGTTAAAATGCTTACGAGTCTTATCATTGAGATGGTACAACATGACAGAATTTCCAGATTCAATTAGCAACTTGAAACACCTAAGGTACCTTGACCTCTCTCATACAAACATTGTAAGGTTACCTGAATCTATGAGTACTCTTTACAGTCTACAGAGTCTAATGCTGATTGATTGCTACCATCTGACTGGGTTAGTTGATAACATGGGCAACCTAATTCATCTGAGGCATCTTGACACAAGGGGAAGTTTTAAATTGCAGAAGATGCCAGTGGGAATTGACAATTTGACAAGTCTCCAAACACTGTCCAGCTTTGTTGTAGGCGAAAATGGTAGCTCAAGGATAAGGGACTTGAGGGACATGTCAAATCTTCGGGGAAAACTATGTATTTTGAAGTTGGAAAATGTAGCAGACATCATAGATGTTGTGGAGGCAAATATAAAGAATAAAGAGCATCTCCATGAACTGGAACTCATTGGTTGCACAAAATGTGAGTCCCTCCCTTCCCTTGGCCTACTACCTTCACTCAGAAACCTTGTCATTGATGGAATGCATGGTCTGGAGGAGTGGTCTTCTGGGGTTGAAGAAAGCGGTGTTAGAGAATTTCCTTGTCTCCATGAACTTACTATATGGAACTGTCCCAATCTAAGAAGATTTTCTCTTCCAAGATTGCCATTGCTTTGTGAACTAGACCTGGAGGAGTGTGATGGAACGATATTGAGAAGTGTGGTTGACCTGATGTCACTAACTTCCTTGCACATATCTGGAATTTCAAATCTCGTGTGCTTACCTGAAGGGATGTTTAAAAACCTAGCATCACTCGAGGAGTTAAAGATTGGGCTTTGCAATCTCAGAAACCTTGAAGATTTAAGAATAGTTAATGTTCCAAAGGTCGAGTCTCTTCCTGAGGGGCTTCACGATCTCACATCTCTAGAGTCTTTGATAATCGAGGGGTGTCCAAGTCTCACGTCCCTTGCAGAAATGGGGTTGCCTGCTTGTCACAGGCTCAAGTCCTTACCAGAAGAGGGGCTGCCCCATTTTCTTTCTCGTCTCGTTATCAGGAATTGTCCTCTTCTTAAAAGACAATGCCAGATGGAAATAGGAAGGCATTGGCACAAGATAGCCCACATTTCCTACATAGAGATTGATAACAGAATGGCGAGAGAAATCTCAAAGGATGAAGAAGGTGGGGATGAAAAAATAATTTCGGGATAA 2646 0.4131 MAVGDAFLSAFLQVLFDRLASPELLKIAQIWRVDVELKKLKGTLLKIQAVLNDAELKQVWNNAVRIWLEDLKHLAYDVEDIVDEFEIEALRWKLEAEPQFDPTQVWPLIPFRRKDLGLKEKTERNTYGISQRPATSSLVNKSRIVGREADKQKLVDLLLSNDTSEGEVCRNGDKVFIIPVSGMGGIGKTTIAQLVYNEERVIQQFELKAWVCVSEEFDLMRVTRSILESATGRSSDLKDLGQLQVSLKKVLRGKRFLIVLDNVWNENYNNWDDLMVPLRAGAQGSKVIVTTRSEAVSLMVGSIPSYNLDGLTYEDSIGKEIVKKCGRLPLVAKALGGLLRNKVLDSELSYYHLPAHLKPCFAYCSIFPKGYELDKENLVLLWMAEGFVQQKQKKQIEDIGREYFDELFSRSFFQKSCSNASSFVMHDLINDLARNISGDISFRLNDASDIKSLCRISEKQRYFACSLPHKVQSNLFPVLKCLRVLSLRWYNMTEFPDSISNLKHLRYLDLSHTNIVRLPESMSTLYSLQSLMLIDCYHLTGLVDNMGNLIHLRHLDTRGSFKLQKMPVGIDNLTSLQTLSSFVVGENGSSRIRDLRDMSNLRGKLCILKLENVADIIDVVEANIKNKEHLHELELIGCTKCESLPSLGLLPSLRNLVIDGMHGLEEWSSGVEESGVREFPCLHELTIWNCPNLRRFSLPRLPLLCELDLEECDGTILRSVVDLMSLTSLHISGISNLVCLPEGMFKNLASLEELKIGLCNLRNLEDLRIVNVPKVESLPEGLHDLTSLESLIIEGCPSLTSLAEMGLPACHRLKSLPEEGLPHFLSRLVIRNCPLLKRQCQMEIGRHWHKIAHISYIEIDNRMAREISKDEEGGDEKIISG* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1219 881 Pfam NB-ARC domain 173 302 IPR002182 GO:0043531
Vvi6g1219 881 Coils Coil 37 57 - -
Vvi6g1219 881 Gene3D - 12 103 - -
Vvi6g1219 881 Gene3D Ribonuclease Inhibitor 449 854 IPR032675 -
Vvi6g1219 881 Pfam Rx N-terminal domain 7 96 IPR041118 -
Vvi6g1219 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 364 IPR027417 -
Vvi6g1219 881 PANTHER DISEASE RESISTANCE PROTEIN RP 33 796 IPR044974 GO:0006952
Vvi6g1219 881 PRINTS Disease resistance protein signature 177 192 - -
Vvi6g1219 881 PRINTS Disease resistance protein signature 500 516 - -
Vvi6g1219 881 PRINTS Disease resistance protein signature 250 264 - -
Vvi6g1219 881 PRINTS Disease resistance protein signature 325 339 - -
Vvi6g1219 881 FunFam Probable disease resistance protein At1g61300 129 302 - -
Vvi6g1219 881 Gene3D - 128 302 IPR027417 -
Vvi6g1219 881 Gene3D - 346 436 IPR036388 -
Vvi6g1219 881 FunFam Probable disease resistance protein At1g63360 350 435 - -
Vvi6g1219 881 SUPERFAMILY L domain-like 415 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1219 Vvi-Chr6 17406804 17415691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1219 182 802 WRKY Transcription Factor Family AT5G45050 21.358 2.39e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1219 - - vvi:100253387 1196.8