Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1211 ATGTCGCCGGCGTTGATAGACTCCGGCACCTCGTCGATTGTCCTGCACCTGCCGTCCGTACACTCTCCGCGGAACCCTAACCCTAACGGTCAGATTTCTCATTCTCCGCTTGTCGATTTTTCTGAGTTTTGTTCAAAGGAGAAGATGAAGTCGTCAAACGCTGGTAATAGAGCTTCTGGGTTTCCGAACTCGAGCGAAATTAATCAGAATTTTAGCTTCAATTCGTGGGTGATGCAGCGATCGGGATCAGAAAATGCGGCATTTGGGTTGAGTTCGGGTGTTTCGAAGCCGCGTCTCGGGAAGGCGAGGAAACACTTGAATTCTCAGCATCCTAGGTCATCGAATGCAGCCCAGGAAACTCGGGTGGGCCCTGGATTTAATCCATTCCGACCAGTTTCCGATATGTCTTTTGAGGGAGAGCCGAGTGGTGGAAATGAGTCATTTGTGTTTGGTGCAAATAGGAGTAATCCAAACCTAAATCTGAATCCAGGTAATGAAATTCTAGATGAAATGAGGAAGTTGAAAATTGCGAATGAAAATGTGGGTGGCAGAGCAAGTTCTAGTGTTTCAGAGGGATTGGTTGATGGCTCTGGTTTTGATGAAAGTTTGGCATCAGAGCTGCCGAATGAGATGAGGAAGTTGAATATTGAAGCTGCAGTGAATCGGGAATGTTTTGAGAAAAGTAATAATTCGAACATTGACTCAAGTGTGACAGATAAAACCCGATTCACCTTTCAGAGAGGTGACAATGTGGGTGGTTCCTTAGGCAGGAGCCTGGGATTTCAACGCTCAAATGAACTGAAGAAATCAAACAAGAGTGAAGATGGTAATGTTGCTATTAATTTGATTGATGCAAATAAATTTGTGTTTGGAAGCAGTAGGAAGGGTATTGATTCTTTCATGGGAAGCTCATCAAGTACACTTCATGATCAGATGAAGAATTTGAACATCGAGGAGTCTGTGAATACTAATGTTGTTGAGAAGGAAGAGGCTGATAACGAGACAATTAACAAGAACAGTTTTCTTTTTGGAAGCACTGGAAGTGCTAGGGGTTATTTTAGTGGAATAGCAGAGAATTCATTGGCTGATGACATGAGGAAGATGAAAATCAGAAACGGGGTAGGAGATACCTCTGGTCAAACAAATACAGAAAAATTGGGTGGTGAGAAATTCCACAATGTTGGTAATTCAATTCCCACAAAATTCACTTTCCAGGCAGTGACAAGTGTTAAGAATTTAAGTGGCAGCCAAGGCCCCTTAGACCAATCAAATGATGACATCAAAATGAAAGGAAAACCTGGAACATTTTCATTTTCATCTCATGACATTCACTTGCAAGCATATGAGAATACTTTTCAGGCACCTTCCATGGACAAATCTGAGGACAGGTTTAGTTTTGCTAATAAACTTGAAGAAAGAGGGACACCCCATGTAGACTTCAGTACACCAAACCCGAAGGTTGACCTATTTTCTAGTGTTAATAAAAAAATAGAATTCAGTGCGAAGAGGGCAGCAGTTGGTGACACAAGAGTCAAGAGAAGGAAGGAAAAGTTGAAGCAACCCAACCCAAACCAGCGGTGGCTTGGGCAAGATTTTGTTTTAAGAGAAAGCAGTTCCCAAGAAAACCCAGAGGCTTCTGAATCTTATTCTCCAATGGATGTTTCCCCGTATCAAGAAACACTGGCTGATAATCAGTTTTCAAGAGAAACCTCTGAGATATCGGTGGAGTCTATTCATCTTGACAACAGCTATGCATCAACTGATTCTCATAAAACAGTTTCAAATGATGCAATAGATGAAGATTTGGTTGTTGCAACACAATGCTTGAATATCAATGTTGATGATGTGAAAGGCAGAGAAACAAAAGAAGGTGATGAGGATTGTTTTGATCAAAGCGTTGGTGCTGGAGGTTCTCTAGAAGAGTCTGTTTCTGGGACTGAAACTGAAAGCTTCAAGTCTCTGACAGAGCAATTTGACATTAACAGTGATATCGCTTCTACTTCAGCAGAAACTGAAGTTAGTTTAATCTCAGACATTGACAAGCAAGTTAATGATGGCAGAACACAATTTTGTTTTGCCTCAAGCTCAGAAGATGTTGGCAGCACTAATTTTACCTTTGCTGCATCTTCCTCTGGTCAAGATCAGTCAGCAGCAGCAATGCGCTACCATAGAAAGAAAAATCGTATAAAAGTTGCTCCTGATTCATACGATTCAGCTCCAAATTTAAAAGTTCCATATACATCATCCTCTGTGCAGTTTTTCCCACTTTCTGGTACCTCACCACTTTCATCCCAAGGGCGAGGTCAAAAGGGAAACATATCTACTTCTCTATGCAAAGGGAGGAATGGTACTGATTCTACCGAAGTGGATAAGCAAAAGGATATCAAGCAAGAGTTTAACTCTACTTCTGCTGCAACTCTTGCAGCTCAGGAAGCCTGTGAGAAATGGCGATTGAGGGGAAACCAAGCCTACACAAATGGGGATTTGTCTAAAGCTGAGGACTGTTACACACAAGGGGTGAATTGCATTTCTCAAAGTGAGACATCTAAAAGCTGTCTCAGGGCTTTGATGCTGTGTTATAGCAACCGTGCTGCAACACGGATGTCTCTTGGAAGAATGAGAGAAGCACTGGGAGACTGTTTGTTGGCTGCTGGTATAGATCACAACTTTCTCAGGGTGCAAGTTAGAGCTGCAAGTTGTTACCTTGCCCTAGGGGAAGTTGAAGATGCATCTTTATATTTCAAGAAGTGCTTGCAGTCAGGAAATGATAGCTGTGTGGACCGGAAAATTGCAGTGGAAGCATCTGATGGCCTTCAAAAGACACAGAAAGTATCTGATTGCATGAACCATTCTGCCGAGCTTTTGGAACAACGAACATCTAGGGATGTAGAGACTGCTTTGGGAATACTTGATGAGGCTTTGATAATTAGCTCATTCTCAGAGAAATTACTTGAAATGAAAGCAGAGGCTCTTTTTATGCTGCGGAAGTACGAAGAGGTGATTCAGTTGTGTGAACAGACACTTGGTTCTGCTGAAAAGAATTCTCCTACTTTAGGTTCTGATGGTCATTTAGCAAATCTAGATGGTTCTGGACTCTCAAAGGACTCCTCATTCAGGCTCTGGCGGGTCCGCTTGATTTTCAAGTCTTACTTTTATCTAGGAAGGCTTGAGGATGCTCTTACATTACTAGAGAAGCAAAAGGAATTTGGGAATGGGAACAAAACTCTGGAATCATCCATACCCTTGGCTGCCACTGTTCGTGAACTACTGCGTCATAAGAATGCAGGAAATGAAGCATTTCAATCAGGAAGGCATGCAGAGGCTGTTGAACACTATACTGCTGCTTTGTCATGCAACATTGTGTCACGTCCTTTTACAGCTATTTGTTTTTGCAATCGTTCTGCTGCCCACAAAGCGTTGGGCCAAATATCTGATGCCATTGCAGATTGCAGCTTGGCCATAGCTCTTGATGGAAATTATCTAAAGGCTATTTCTAGACGAGCCACTTTATTTGAGATGATTAGAGATTACGGACAAGCAACTTCTGATCTTCAGAGACTTGTATCTCTTCTCTCAAAGCAACTGGAGGAGAAGGTGAATCAGCCTGGAGGATATGACAGATCAACAAGCTTTGGAAATGATCTTAGACAAGCTCAGTTGCGACTTTCCTTAATGGAAGAAGAAGACAGAAAAGACATCCCCTTGGATATGTACCTCATTTTGGGAGTTGAACCATCTGCCTCGGCATCAGATATTAAGAAGGCATATCGGAAAGCTGCACTTAGACATCATCCTGACAAGACTGGTCAATCCTTGGCAAAAAGTGAGAATGGGGATGGTGGGTTTTGGAAGGAAATAGCAGAAGAGGTCCACAGGGATGCGGACAAGCTTTTCAAAATGATTGGAGAGGCATATGCAATCCTTTCAGACCCATCAAAGCGCTCACGGTACGACCATGAAGAGGAGATGAGGAATGCACAGAAGAGAGGAAATGGAAGCAGCACATCAAGAGTCCATACAGATGTCCAAAATTTTCCATTTGAGAGAAGCAGCAGCAGGAGACAATGGCGGGAGGTTTGGGGATCATATGGGCACTCATCCTCCCGAGGGTCCGAAGCGGCTCGATCAAATAGGTACTCATGA 4143 0.4284 MSPALIDSGTSSIVLHLPSVHSPRNPNPNGQISHSPLVDFSEFCSKEKMKSSNAGNRASGFPNSSEINQNFSFNSWVMQRSGSENAAFGLSSGVSKPRLGKARKHLNSQHPRSSNAAQETRVGPGFNPFRPVSDMSFEGEPSGGNESFVFGANRSNPNLNLNPGNEILDEMRKLKIANENVGGRASSSVSEGLVDGSGFDESLASELPNEMRKLNIEAAVNRECFEKSNNSNIDSSVTDKTRFTFQRGDNVGGSLGRSLGFQRSNELKKSNKSEDGNVAINLIDANKFVFGSSRKGIDSFMGSSSSTLHDQMKNLNIEESVNTNVVEKEEADNETINKNSFLFGSTGSARGYFSGIAENSLADDMRKMKIRNGVGDTSGQTNTEKLGGEKFHNVGNSIPTKFTFQAVTSVKNLSGSQGPLDQSNDDIKMKGKPGTFSFSSHDIHLQAYENTFQAPSMDKSEDRFSFANKLEERGTPHVDFSTPNPKVDLFSSVNKKIEFSAKRAAVGDTRVKRRKEKLKQPNPNQRWLGQDFVLRESSSQENPEASESYSPMDVSPYQETLADNQFSRETSEISVESIHLDNSYASTDSHKTVSNDAIDEDLVVATQCLNINVDDVKGRETKEGDEDCFDQSVGAGGSLEESVSGTETESFKSLTEQFDINSDIASTSAETEVSLISDIDKQVNDGRTQFCFASSSEDVGSTNFTFAASSSGQDQSAAAMRYHRKKNRIKVAPDSYDSAPNLKVPYTSSSVQFFPLSGTSPLSSQGRGQKGNISTSLCKGRNGTDSTEVDKQKDIKQEFNSTSAATLAAQEACEKWRLRGNQAYTNGDLSKAEDCYTQGVNCISQSETSKSCLRALMLCYSNRAATRMSLGRMREALGDCLLAAGIDHNFLRVQVRAASCYLALGEVEDASLYFKKCLQSGNDSCVDRKIAVEASDGLQKTQKVSDCMNHSAELLEQRTSRDVETALGILDEALIISSFSEKLLEMKAEALFMLRKYEEVIQLCEQTLGSAEKNSPTLGSDGHLANLDGSGLSKDSSFRLWRVRLIFKSYFYLGRLEDALTLLEKQKEFGNGNKTLESSIPLAATVRELLRHKNAGNEAFQSGRHAEAVEHYTAALSCNIVSRPFTAICFCNRSAAHKALGQISDAIADCSLAIALDGNYLKAISRRATLFEMIRDYGQATSDLQRLVSLLSKQLEEKVNQPGGYDRSTSFGNDLRQAQLRLSLMEEEDRKDIPLDMYLILGVEPSASASDIKKAYRKAALRHHPDKTGQSLAKSENGDGGFWKEIAEEVHRDADKLFKMIGEAYAILSDPSKRSRYDHEEEMRNAQKRGNGSSTSRVHTDVQNFPFERSSSRRQWREVWGSYGHSSSRGSEAARSNRYS* 1381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1211 1380 Gene3D Tetratricopeptide repeat domain 1088 1202 IPR011990 GO:0005515
Vvi6g1211 1380 MobiDBLite consensus disorder prediction 620 646 - -
Vvi6g1211 1380 MobiDBLite consensus disorder prediction 523 556 - -
Vvi6g1211 1380 Gene3D DnaJ domain 1223 1342 IPR036869 -
Vvi6g1211 1380 SMART tpr_5 1127 1160 IPR019734 GO:0005515
Vvi6g1211 1380 SMART tpr_5 891 924 IPR019734 GO:0005515
Vvi6g1211 1380 SMART tpr_5 981 1014 IPR019734 GO:0005515
Vvi6g1211 1380 SMART tpr_5 1089 1122 IPR019734 GO:0005515
Vvi6g1211 1380 SMART tpr_5 813 846 IPR019734 GO:0005515
Vvi6g1211 1380 SMART tpr_5 1161 1194 IPR019734 GO:0005515
Vvi6g1211 1380 SMART tpr_5 857 890 IPR019734 GO:0005515
Vvi6g1211 1380 MobiDBLite consensus disorder prediction 759 783 - -
Vvi6g1211 1380 MobiDBLite consensus disorder prediction 1328 1350 - -
Vvi6g1211 1380 ProSiteProfiles dnaJ domain profile. 1236 1321 IPR001623 -
Vvi6g1211 1380 SMART dnaj_3 1235 1313 IPR001623 -
Vvi6g1211 1380 ProSitePatterns Nt-dnaJ domain signature. 1298 1317 IPR018253 -
Vvi6g1211 1380 MobiDBLite consensus disorder prediction 101 125 - -
Vvi6g1211 1380 Coils Coil 994 1014 - -
Vvi6g1211 1380 SUPERFAMILY TPR-like 1092 1190 IPR011990 GO:0005515
Vvi6g1211 1380 MobiDBLite consensus disorder prediction 1312 1380 - -
Vvi6g1211 1380 Pfam DnaJ domain 1236 1318 IPR001623 -
Vvi6g1211 1380 PRINTS DnaJ domain signature 1293 1313 IPR001623 -
Vvi6g1211 1380 PRINTS DnaJ domain signature 1238 1256 IPR001623 -
Vvi6g1211 1380 PRINTS DnaJ domain signature 1256 1271 IPR001623 -
Vvi6g1211 1380 PRINTS DnaJ domain signature 1313 1332 IPR001623 -
Vvi6g1211 1380 MobiDBLite consensus disorder prediction 504 521 - -
Vvi6g1211 1380 MobiDBLite consensus disorder prediction 759 790 - -
Vvi6g1211 1380 MobiDBLite consensus disorder prediction 1312 1327 - -
Vvi6g1211 1380 MobiDBLite consensus disorder prediction 504 556 - -
Vvi6g1211 1380 SUPERFAMILY Chaperone J-domain 1205 1317 IPR036869 -
Vvi6g1211 1380 Gene3D Tetratricopeptide repeat domain 774 1074 IPR011990 GO:0005515
Vvi6g1211 1380 CDD DnaJ 1236 1310 IPR001623 -
Vvi6g1211 1380 SUPERFAMILY TPR-like 814 1008 IPR011990 GO:0005515
Vvi6g1211 1380 MobiDBLite consensus disorder prediction 372 392 - -
Vvi6g1211 1380 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 49 1369 - -
Vvi6g1211 1380 MobiDBLite consensus disorder prediction 1361 1380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1211 Vvi-Chr6 17294050 17318372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1211 1238 1318 C2H2 Transcription Factor Family AT1G74250 32.099 8.70e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1211 K09527 - vvi:100256902 2712.18