Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1201 ATGGAGTTTGTGGGAAGACCAGTGAAGAAGGAGTTTCATGGGTTTGGGATTTTCTCGGGACTCGTCAAATCCTATGACCCAGAATCTGGTTTCTTCGAAATACTGTACGAAGATGGCGATTCTGAGGAGCTGGAATGGTCTGAACTTGCTTTCCTGTTGGAGGGTGAGGTGGCTGATCCTGGTCTGGTCGAGTTGACCCAGAAGCCTCGGGTTGGTCGCAAGCCCAAGAAACGGCGGAGAGTGGAGATTAAGCCTGAAAATCCGGAGAATTCAGGTAACACTTCTGGACATTTGGATAATTTGAATGGTGGGTTTTCGGAAACCCTAGGGAAATCTGGGGAAGGTGTGGGAAAATTTGGGGTGAATGGTGGCTTTGATTTAAATGATGGGTTTAATTTTAATAATGGGTGCAGTTTGAGTGTTGATTGTGAGGAAAATGTGACGAGGAGTAATTATATTGATTTGAATTTGAATGTGAATGGTGATTTTGATGAAAGCTCAAAGGCGATTGAGTTGGGTTGTGCTGTTGTGGAAACCCGGAAGAAGGGATGTTCTTTTGATTTGAATTTGGGGTTAGACGATGAAATGAAGGACGCAGATGTTGAATGTGGAGGACAGTTGAAAGAAATTCATGTAGATGGTGGTGGTGGGGGTGGTGCAAATGGGACTTTGGAGGGAGGTGTCTCAGCGAAGGGTGTCAATGATTCCAGAGAGTTTGTGTTGGCAGATTCTGGTTTGTGGCAGGTTGGAGTTCCAAGGGAAGATGGTATTTCAATGGCACTTTGGATGGAAAATGCTTCTAACTGTGTAAATCATAGTGCATTTTCTGAAGTTCAATTGGAGGGTCTCTCTGGAGATAGCATTGCCGTAATCAGTGGATGTCAGGGAAACTTGGTAAGCCCATATAACGAAGGAAAAAGAGGTAGAAAGAGAAGAAAACTATTAAATAATTTGACATCTGGGACAGAAACAGTGTTGAGAAGAAGTACTCGAAGAGGGTCTGCCCAGAAAGGTAATGTTTCAAGCATAATGGTACCATTTGCAGTCAGTGATGGATCCCCATCTGCAGCTGTTAGTCTAGTATCAGAGGGGAAGCCTATTATCTCTGGTCATGCAGGAATTGAAGATTGCATTGGTCTTCCCCCAAAGCTGCAATTGCCCCCTTCATCACAGAACTTGAATTTGGATGGAATTCCCATATTTGACTTTTTCTCTGTTTATGCCTTTTTAAGGTCATTTAGTACATTATTATATTTAAGTCCCTTTGAGTTGGAAGATTTTGTGGAAGCATTGAGATGCAATTTTTCTAACCCTTTGTTCGATTCTGTCCATGTTTCTCTATTGCAAACTTTGAGAAAGCATTTGGAATTTCTATCAGATGAAGGTTCCCAATCTGCTTCCAGTTGTTTGAGGTGTCTTAATTGGGGTTTGCTGGATTCAGTTACATGGCCAGTGTTCATGGCTGAATACCTACTGATTCATGGTTCAGGTTTGAAACCTGGTTTTGATTTTAGTTGTTTGAAGCTATTTGACAATGACTACTGCAAACGACCTGTGGCTGTAAAGGTTGAGATACTTCGATGTCTGTGTGATGATGTGATTGAAGTGGAGGCGCTAAGATCAGAGCTCAGTAGAAGATCATTGGCAGCTGAGCCTGATATGGAATTCAATCGGAATGTTAACATTGAGATCTGCAAGAAAAGGAGGGCTATGATGGATGTTTCAGGTGGTTCTTGCTTGGCTGAGGAGGTTGTTGATGAAATCAATGACTGGAATAGTGATGAATGCTGCCTCTGCAAGATGGATGGAAACTTAATATGCTGTGATGGATGTCCTGCTGCATATCATTCAAGATGTGTAGGTGTTGCTAGTGATCTTTTGCCAGACGGTGACTGGTATTGCCCTGAGTGTGCAATTGACAAGGATAAGCCCTGGATGAAGCAGCGAAAATCACTTCGAGGAGCAGAGCTGTTGGGAGTTGATCCTCATGGTCGTCTGTATTTTAGCAGCTATGGTTACTTATTGGTGTCAGATTCATGTGACACTGAATCCTCATTCAATCATTACTCCAGAAATGAATTGAATGATGTTATTGAAGTGCTGAAGTTTTCAGAGATTCATTACGGTGAAATAATAACTGCAATCTGCAAGCACTGGGGATCCTCTGTTAATTTAAATGGAGCAACTAGCAGTTTGGACTCTGAGAACCATGCTATATTTTCAGATATGGTTAGGAAAGCACAAACCACTGCCATTTGTATGACCCCGCTACCTTGGACACCTGAAACCTGTGCGGTTAAGGAGGAGAGCACTGATGAAAGAAAGCCAGGAGAGAAATCTGTTGCTGAAGTTTCTCTCAGCTGTGGGGTTTCAAAGTCTATTACCTTGTTGAATTCAACGATTGTGAACAGTTCTATGGAGATAGAAAATCCTATTGCAAGTTCTGAACAATCAGCAGAAATTATACAATCGAGCACAGGCATTCAGAATTTCCAGAATCATGGGTCAGACTGTTTAAATACATCTGCTAGAATCTCAAATCAAGCTGAGAGTCCTGAAAAAACCCCACCTGTTGGGAACTGTTCTATATCTACTAGCATTGATGTTGAACAAGAAAAAAAGATAGAATCTGCAGTCGATGGCCATACTTCATCTCCCATACACACGAGAAAAGAGGATGTATCACAGGTACAGTGTGGAATTGATTACACAAACTATTACAGTTTTGCTCAAACAGCCTCATCAGTTGCAGAAGAGTTAATGCATAAGTCATCCGACAAGAGCAAAGAACACTCCACAACATCAGCTGAGGAAATAATTTCAGCACAGATAAAAGCCATTTCAAAGAATTTTACGAAGTTTTGTTGGCCAAATGCTCAGAGTCTAACCATGGATGCTGAGAAAGAAAATTGTGGGTGGTGCTTCTCTTGCAAAGATTCCACTGGTGACAAGAATTGCTTGTTTAAAACGAATTTTATGGTGCCTGTTCAGGAAGGTTCTAAAAGTGAGGGGGTTGGCCTCCAATCAAAGAAGAATAGGAAAGGCCATCTTGTTGATGTCATAAATTACATCCTCTCTATTGAAGTTCGCCTGCGTGGGCTTCTCATGGGTCCATGGATGAATCCACATCATGCTAAACTTTGGTGTAAAAATGCTCTCAAGGCATCTGATGTTGCATCAGTAAAACATCTGCTGCTCACATTAGAGTCAAATTTGCGTCGCCTTGCACTCTCTGCTGATTGGTTGAAACAGATGGATTCTTTTATTACAATGGGTTCAGCTTCTCACATTGTGATAAGTTCGCGTGCATCTTCAAAGCTTGGGGTTGGGAAAAAACGGACTAGGTGTTCTGGTTTTGTCTCCAAACCTTCATCAAATGCAGCCACAGGATTGAGTTTATTTTGGTGGAGGGGTGGTAGGCTTTCACGTAAGTTGTTCAATTGGAAGGTTTTGCCTCGCTCTTTGGCTTCCAAGGCTGCTCGACAAGCTGGATGTACAAAGATACCGGGCATATTATATCCTGAAAGTTCAGAATTTGCAAAAAGAAACAAGTATGTTGTCTGGCGATCTGCTGTTGAGACCTCAACAAGTGTAGAGCAGCTTGCTTTGCTGGTTAGAGAGCTTGATTTGAACATTAGGTGGGATGACATTGAAAACACGCATCCTCTCTTTAAGTTGGACAAGGAAGCTAGAAAATCTATCAGGCCATTCAGGAAGGTTATAATCCGCAGAAAGTGCATAGAAGGAACAATATCAAAGTATCTACTTGATTTTGGCAAGAGAAAAATCATCCCTGATGTGGTCGTTAAGCATGGGTCTATTCTTGAAGAGTCCTCTAGTGAAAGGAAGAAATACTGGCTGGATGAATCTCATGTTCCCTTGCATCTCTTGAAAGCCTTTGAAGAGAAGAGAATTGCTCGCAAATCCAGTAATATTAATTCCGGAAAACTAAATGAGGGTGGTAGAGAAATGAAGAAGCCCTCCAAGGACAAGGGTTTTTCGTACCTTTTCTTGAAGGCCGAAAGATCTGAGAATTATCAATGTGGACACTGTAAGAAAGATGTCCTGACCAGGGAAGCTGTAAGCTGCCAGTACTGCAAAGGCTATTTCCATAAAAGGCATGTCAGAAAATCTGCTGGTTCCATCAGTGCTGAATGTACGTATACATGTCATAAATGCCAGGATGGGAAGCCCATGAAGATCAACGCAAAAATTGGGAATGTCCAGTCTCAAAAGGGTAAAAAAGGCTCCACAGATTTGTATAAGAAAAAAGGAAAAGCCTACAAAAATTGCAGGCTATTGGGATCAAAAAGTGGTAAAAAAATTTTCACAAAGGAACAGCCTGTGCGTTCATGTAAGGGTAGAAAACCCTCCACAGGTAAACGGCCTGTACGATCACTTGTCAAGAGAGAAGTTTCCACAGTTGTTCCTCTTCGGCGTTCAGCAAGGAAAATTAAATTTGTGTCTCTGCAAAATAAAAATCTTGAAGAACAGGACAAAGGCAAACAGGAAAAAGGCAAACAGGAAAAAGGTAAACAGGTTAAATCAATGAAATCCAAAAAGAGGACACCTAAGAAGCCAAAGAAAGAGACCTCTTGGAAGAAGAAGAAGAGGAGGACACTGGTTTGTTACTCTTACTGGCTTAACGGTCTCCTATTGTCTAGAATGCCAAATGATGATCGAGTGATGCAGTTTAGGAGGGAAAGACTTTTTGTCCCTTCTGAACACTTGAACGTTGTCATTGATAAACCCACCTGTCATCTTTGTGCTGAAGCAGGACATACACCAATGCTAAACTACATTAACTGTGAAATCTGTGGAGATTGGTTTCATGGAGATGCTTTTGGACTTGATGTGGAAACTATTGGTAATCTTATCGGTTTTAGGTGCCATGAATGCTGTAAGAGGACACCCCCTGCATGCCCACATTTGCAAGGTATGAGCCGCGATGAGGCACAATTGGATGAGGTGAAAAGTGATGTAGGGATTGACTGTTTGGTTCCCCAAAGTGAGGCATATGTCAGACAAGAATCTCAGTCAGATGAGGATTCTCCAGGTTTATTTGTGGTTGATGAGTCCATTCATAAGGAGGAGCAAGTAGGTGCAGTTCCAGGTTCAAATCAGGGGCCCATTTTGAAACCTAAGTTGGAAGGTGAAAACGGGCACTTGCTCGCTTTTGAGATGCAGAAAACAGATGCAACTGAAAGTTCTGATGATAAGGATTTTGAAGCTGGTGTACCAATGAAAACTGAAGAGAATCTTACATTGGAAGAGAATACCATTGAGTTAGGAAAAGAAAATGTTACTGTGGAACCCCCATCCTGTGAGGCTGATGTTGATATGACAGACACAGAAATTGCATCATCAAGGCATGAGGAAGCAACTAATGGTTTGTTGAAATCAATCATTCTAGATGAGGCAGTGGGGGATTCACTTTTTCAGGCGAAGCTCCTATCCTGCAAGGCTGATGTGGATGTGACAGACACAGAAATGGGATCATCAAGGCATGAGGAAGCGACCAATGGTTTGTTGAAGACATCGGTCATCCTAAAAGAGCCAGTTGATGGAACTCTTGTTGACTCATCTAAGTTGCATCAGACAATTCTGGCATCAGGTGAACTATTAGATATGGGAGAAAAAAAATGTTTAGATTAG 5655 0.4189 MEFVGRPVKKEFHGFGIFSGLVKSYDPESGFFEILYEDGDSEELEWSELAFLLEGEVADPGLVELTQKPRVGRKPKKRRRVEIKPENPENSGNTSGHLDNLNGGFSETLGKSGEGVGKFGVNGGFDLNDGFNFNNGCSLSVDCEENVTRSNYIDLNLNVNGDFDESSKAIELGCAVVETRKKGCSFDLNLGLDDEMKDADVECGGQLKEIHVDGGGGGGANGTLEGGVSAKGVNDSREFVLADSGLWQVGVPREDGISMALWMENASNCVNHSAFSEVQLEGLSGDSIAVISGCQGNLVSPYNEGKRGRKRRKLLNNLTSGTETVLRRSTRRGSAQKGNVSSIMVPFAVSDGSPSAAVSLVSEGKPIISGHAGIEDCIGLPPKLQLPPSSQNLNLDGIPIFDFFSVYAFLRSFSTLLYLSPFELEDFVEALRCNFSNPLFDSVHVSLLQTLRKHLEFLSDEGSQSASSCLRCLNWGLLDSVTWPVFMAEYLLIHGSGLKPGFDFSCLKLFDNDYCKRPVAVKVEILRCLCDDVIEVEALRSELSRRSLAAEPDMEFNRNVNIEICKKRRAMMDVSGGSCLAEEVVDEINDWNSDECCLCKMDGNLICCDGCPAAYHSRCVGVASDLLPDGDWYCPECAIDKDKPWMKQRKSLRGAELLGVDPHGRLYFSSYGYLLVSDSCDTESSFNHYSRNELNDVIEVLKFSEIHYGEIITAICKHWGSSVNLNGATSSLDSENHAIFSDMVRKAQTTAICMTPLPWTPETCAVKEESTDERKPGEKSVAEVSLSCGVSKSITLLNSTIVNSSMEIENPIASSEQSAEIIQSSTGIQNFQNHGSDCLNTSARISNQAESPEKTPPVGNCSISTSIDVEQEKKIESAVDGHTSSPIHTRKEDVSQVQCGIDYTNYYSFAQTASSVAEELMHKSSDKSKEHSTTSAEEIISAQIKAISKNFTKFCWPNAQSLTMDAEKENCGWCFSCKDSTGDKNCLFKTNFMVPVQEGSKSEGVGLQSKKNRKGHLVDVINYILSIEVRLRGLLMGPWMNPHHAKLWCKNALKASDVASVKHLLLTLESNLRRLALSADWLKQMDSFITMGSASHIVISSRASSKLGVGKKRTRCSGFVSKPSSNAATGLSLFWWRGGRLSRKLFNWKVLPRSLASKAARQAGCTKIPGILYPESSEFAKRNKYVVWRSAVETSTSVEQLALLVRELDLNIRWDDIENTHPLFKLDKEARKSIRPFRKVIIRRKCIEGTISKYLLDFGKRKIIPDVVVKHGSILEESSSERKKYWLDESHVPLHLLKAFEEKRIARKSSNINSGKLNEGGREMKKPSKDKGFSYLFLKAERSENYQCGHCKKDVLTREAVSCQYCKGYFHKRHVRKSAGSISAECTYTCHKCQDGKPMKINAKIGNVQSQKGKKGSTDLYKKKGKAYKNCRLLGSKSGKKIFTKEQPVRSCKGRKPSTGKRPVRSLVKREVSTVVPLRRSARKIKFVSLQNKNLEEQDKGKQEKGKQEKGKQVKSMKSKKRTPKKPKKETSWKKKKRRTLVCYSYWLNGLLLSRMPNDDRVMQFRRERLFVPSEHLNVVIDKPTCHLCAEAGHTPMLNYINCEICGDWFHGDAFGLDVETIGNLIGFRCHECCKRTPPACPHLQGMSRDEAQLDEVKSDVGIDCLVPQSEAYVRQESQSDEDSPGLFVVDESIHKEEQVGAVPGSNQGPILKPKLEGENGHLLAFEMQKTDATESSDDKDFEAGVPMKTEENLTLEENTIELGKENVTVEPPSCEADVDMTDTEIASSRHEEATNGLLKSIILDEAVGDSLFQAKLLSCKADVDVTDTEMGSSRHEEATNGLLKTSVILKEPVDGTLVDSSKLHQTILASGELLDMGEKKCLD* 1885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1201 1884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 588 655 IPR013083 -
Vvi6g1201 1884 CDD Tudor_AtPTM-like 4 53 IPR047365 -
Vvi6g1201 1884 ProSiteProfiles Zinc finger PHD-type profile. 593 640 IPR019787 -
Vvi6g1201 1884 SUPERFAMILY FYVE/PHD zinc finger 1584 1639 IPR011011 -
Vvi6g1201 1884 CDD PHD2_CHD_II 596 637 - -
Vvi6g1201 1884 PANTHER PHD FINGER FAMILY PROTEIN 2 1685 - -
Vvi6g1201 1884 MobiDBLite consensus disorder prediction 1445 1466 - -
Vvi6g1201 1884 SMART testlast3 397 457 IPR018501 -
Vvi6g1201 1884 CDD PHD_SF 1585 1633 - -
Vvi6g1201 1884 MobiDBLite consensus disorder prediction 1514 1535 - -
Vvi6g1201 1884 MobiDBLite consensus disorder prediction 87 104 - -
Vvi6g1201 1884 Pfam DDT domain 402 453 IPR018501 -
Vvi6g1201 1884 MobiDBLite consensus disorder prediction 1496 1535 - -
Vvi6g1201 1884 Pfam PHD-finger 596 638 IPR019787 -
Vvi6g1201 1884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1581 1641 IPR013083 -
Vvi6g1201 1884 ProSitePatterns Zinc finger PHD-type signature. 596 637 IPR019786 -
Vvi6g1201 1884 MobiDBLite consensus disorder prediction 1496 1513 - -
Vvi6g1201 1884 SUPERFAMILY FYVE/PHD zinc finger 583 649 IPR011011 -
Vvi6g1201 1884 SMART PHD_3 595 638 IPR001965 -
Vvi6g1201 1884 SMART PHD_3 1585 1634 IPR001965 -
Vvi6g1201 1884 SMART PHD_3 1347 1394 IPR001965 -
Vvi6g1201 1884 ProSiteProfiles DDT domain profile. 397 457 IPR018501 -
Vvi6g1201 1884 Coils Coil 1478 1498 - -
Vvi6g1201 1884 MobiDBLite consensus disorder prediction 68 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1201 Vvi-Chr6 17124111 17143658 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1201 1 1648 PHD Transcription Factor Family AT5G12400 41.544 0.0 1118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vvi6g1201 DDT 9.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1201 - - vvi:100260139 3673.25