Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1196 ATGGCTTTCTTTAGAAACTACTCGAATGAAACGGTAGCACAGAGTGTCCTGGATGAGAAGGGCCAAGGGCAAAACATTGATAGAGTTCACAGTTCAGTAGCAAATGAATATGTAGATGCGACTTCAAGTGAAAAGGATTTTGAATCAAAGGTGGATGGGCAATATCAAAGTGATGGTGATACAAATGATGCTGGGCTGCAAAATGAGGCAGCAGCTGCTGATGATATTGGTTTGAGAATATCAAATTTGCAGCCCTCTGGAAGGAGAACAGCTATGGCAGGGAAGTGGGGTTCAACCTTTTGGAAAGACTGCCAACCCATGGGTCATCGGAATGGTTCTGAATCTGAGCAGGATTCAAAATGTCGTTTTGATTGTAAAAATGAGGAAGCATTGGAAGACAATTCATCTGATGGCAGGGAAGTTGACAAGGTTCAGAAGGGTCAAAATGATGTTCCTGCAGATGAGATGTCATCTGATGATTACTACGAACAGGACGGGGAAGACCAAAGTGACTCGTTACATTACAGAGGTTTAAATCATTCCAGTGTCTTAAACTCACAACCACAGTCAAGACCTGTTGCTGTAAACATGGCTCGGAATTCAAAAGCTTCAAATGATAATGAATATGATGATGACGAGGATGGTGATAATGATGGTGATGCTGATTATGAAGATGAGGATGAGGAAGAGGAAGATGATGATCCTGATGATGCAGATTTTGAACCTGATTATGGTGTCACTAGCAGCAGAACTGCCAACAAGTACCAGGATAAGGACTGGAATGGTGAAGATTCTGATGAAGATGATAATAGCAATGATGATCTAGATGTCTCAGATGAGGATGATGCATATTATATGAAGAAACCCAAGGGTAGACTACGAGGTAACAGTGGACGTGGTTTAAAACCTACGAAAGAGCATAAATCATTCCCTGCACCTGGTCGAAGAAAAAGAGGCAGAACGTTATTGGAAGATGAAGATTCTTATGAAAAGGATTCTGAAAATGATAGTGATGAGGATTTCAAAAGCATGACAAGGAGAGGTGCACATCTCCGAAAAAGTAAAGGTGGTCAGTCCAGTACTACAGCAAATATCATTGGACGGAACAGTGAGCTCCGCACCTCAAGTAGATCAGTGAGGAAGGTATCATATGTTGAAAGTGAGGAAAGTGAAGAAATTGATGAAGGCAAGAAGAAAAAGAGCCAAAAGGAGGAAATTGAAGAGGAAGATTGCGATTCAATCGAAAAGGTGCTTTGGCATCAGCCAAAAGGCATGGCTGACGAGGCTCTAAAGAATAATAAATCAACAGAGCCCATTCTGTTAAGCCACTTGTTTGACTTTGAACCCAACTGGAATGAGATGGAGTTCTTAATAAAATGGAAAGGCCAGTCTCATTTGCACTGTCAGTGGAAATCATTTTCTGATCTACAAAATCTTAGTGGTTTTAAGAAGGTTTTAAATTACACCAAAAAAGTGATGGAGGAAGTGAAGTACAGGAACATGTTTTCACGTGAGGAGATTGAAGTCAATGATGTAAGCAAGGAAATGGACTTAGACCTCATTAAACAAAATAGTCAGGTGGAGAGAATAATTGCATACAGAATTGGTAAAGAGGGCTCAGGTGATGTGATGCCAGAGTATTTAGTCAAGTGGCAGGGACTCTCATATGCTGAAGCAACATGGGAGAAGGATGTAGATATTGCATTTGCTCAAGATGCTATTGATGAGTACAAGGCTCGTGAAGCTGCAGCTGCCATCCAAGGAAAAATGGTGGACATGCAGCGTAAGAAGAGTAAAGCAAGTTTAAGGAAGCTTGATGAGCAGCCTGGGTGGTTAAAGGGAGGACAACTTCGTGATTATCAGCTTGAAGGCTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAGAATGCTCAACAAATATATGGACCATTTCTTGTTGTTGTACCATTATCGACTTTATCAAACTGGGCAAAAGAATTCAAGAAGTGGCTTCCTGACTTGAATGTCATTGTTTATGTTGGGACCCGTGCTAGCCGAGAGGTTTGTCAGCAATATGAATTTTACACTAATAAGAAAACTGGCAGGACTATTCTATTCAATGCTTTATTGACTACTTATGAAGTAGTTCTGAAGGACAAGGCTGTGCTTTCTAAGATCAAATGGAACTACCTCATGGTTGATGAAGCCCACAGGTTAAAGAACAGTGAAGCACAATTGTATACAACCCTCTCGGAATTCAGTGCCAAGAACAAGTTGCTGATCACTGGTACTCCATTACAGAACAGTGTTGAAGAGCTTTGGGCTCTACTTCACTTCCTTGATCCTGATAAATTCAAGAACAAAGATGATTTTGTTCAGAATTACAAGAATCTTAGCTCATTCAACGAAATGGAGCTTGCAAATCTTCATATGGAATTGAGGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGGTTGAAATGTCCCCTCTTCAAAAACAGTATTATAAGTGGATTTTGGAACGCAATTTCCATGACTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCACTTCTAAATATTGTTGTAGAATTGAAGAAATGCTGCAATCATCCTTTTCTATTTGAAAGCGCAGACCATGGTTATGGTGGGAACAGAAGTACCAATGACTGCGGTAAACTGGAGAGGCTTATTTTAAGCAGTGGGAAGCTTGTTTTACTTGATAAGCTACTTGAGAAATTGCATGAGACGAATCATCGTGTTCTAATATTTTCTCAGATGGTTAGAATGTTGGATATACTGGCAGAATATATGTCACTTAGAGGGTTCCAATTTCAGCGGCTTGATGGTAGTACAAAGGCTGAGTTGCGTCAGCAGGCAATGGATCATTTTAATGCACCTGGAAGTGATGATTTCTGTTTCCTCCTTTCAACCCGTGCTGGTGGCCTGGGCATTAACCTTGCAACTGCAGACACAGTTATTATATTTGATTCTGACTGGAATCCCCAAAATGACTTACAGGCAATGAGTAGGGCTCATAGAATTGGGCAACGAGAAGTAGTTAACATCTACCGATTTGTTACAAGCAAAAGTGTTGAGGAAAATATTCTGAAGCGAGCCAAGCAAAAGATGGTACTTGATCATTTGGTGATTCAAAAACTAAATGCAGAAGGTAGACTGGAGAAGAAAGAATCGAAAAAGGGGAGTTACTTTGACAAAAATGAGCTGTCGGCTATTTTAAGGTTTGGGGCGGAGGAACTTTTTAAGGAAGACAAAAATGAAGAAGAAAGCAAAAAGAGGCTCTTAAGTATGGATATTGATGAAATTCTTGAAAGAGCAGAGAAAGTAGAAGAGAAGGAAACTGGAGAGGAAGGGAATGAATTATTGAGTGCTTTTAAGGTTGCAAATTTCGGTAGTGCTGAAGATGATGGGAGTTTCTGGTCCCGTTGGATAAAACCAGAAGCTGTAGCGGAAGCTGAAGATGCTTTAGCTCCACGTGCTGCAAGAAATACCAAGAGCTATGCTGAGGCTAATCAACCTGAGAGAATTAGTAAAAGGAAAAAGAAGGCTGCTGAACCACAGGAGAGAGCTCAGAAGCGCCGCAAAGCAGATTATTTGGTTCATTTAGTGCCAAGGATTGAGGGAGCGGCTGCTCAAGTAAGGGGTTGGTCTTATGGTAACTTGCCAAAGAGAGATGCATCACGTTTTTCTCGTGCGGTATTGAAATTTGGAAACCCCAGTCAAATTGGCTCAATTGTCATGGAGGTTGGTGGTACAATTGAAGCAGCTCCAACTGAAGCACAAATTGAGCTTTTTGATGCATTAATTGATGGGTGTAGAGAGGCAGTTAAAGAAGGAAATCTAGACCCAAAGGGGCCTATGTTGGACTTTTTTGGTGTCCCGGTAAAAGCTAATGAAGTACTTAACCGTGTTCAAGAACTTCAGCTCCTAGCTAAGCGCATCAGTCGCTATGAAGATCCCATTGCCCAGTTCCGGGTGTTAATGTACCTCAAACCTTCAAATTGGTCTAAAGGTTGTGGCTGGAATCAGATTGACGATGCCAGATTGCTTCTTGGAATACATTATCATGGATTTGGCAATTGGGAAAAGATAAGATTAGATGAAAGGCTGGGTCTCACAAAAAAGATCGCTCCAGTTGAACTTCAACACCACGAAACCTTCCTACCTCGTGCTCCCAACCTGAAAGACCGTGCTTCTGCACTTCTGGAAATGGAACTTGTAGCTGTTGGTGGGAAGAACACCAATACCAAAGCTAGTCGCAAGACTTCTAAAAAGGAGAAGGAGAGAGAGAATCTTATGAATATCTCAATATCTCGCAGCAAGGACAGGAAAGGAAAACCTGGTTTTCCTGTAACTAACGTTCAAATGAGGAAGGATAGATCCCATAAACCCCATAGAGTTGAACCTTTAGTGAAAGAGGAGGGTGAAATGTCCGGTAATGAAGAAGTATATGAGCAGTTCAGGGAAGTGAAATGGATGGAATGGTGTGAAGATGTCATGAAGACGGAGATTAAGACCCTGAACCGTCTTCACAAATTACAAACTACTAGTGCTAATCTTCCAAAGGATTTGGTGCTTTCAAAAATTCGGAAGTATTTGCAGCTTCTTGGACGAAGGATAGACCAAATTGTTCTGGAGCATGACAAGGAACAATATAAACAAGACAGAATGATCATGAGGTTGTGGAATTACATCTCAACTTTTTCAAATTTGTCTGGGGAGAAGCTTCGTCAGATTCATTCAAAACTTAAACAGGAGCAAGATGAGGATGGAGGGGTAGGATCATCTCATGTCAATGGTTCTGCATGGGGCCCTGGTGACAAAGACAGTGATCCTGGTCAGTTCCCTTCTTTTCATCGCCATGGTGAGAGACCACCAAGAGGGTACAAAAATATGTCTGCCTATCAAACAGCAGAACCAGTTTCTAAGAGTCATGATGCTGGGAAATTTGAAGCATGGAAACGGAGGAGAAGAGCTGATAATATTAACACTCATTCCCTGACTCAGCCCCTGCCTCAAAGGCCAATGAGCAATGGTTCCCGTTTACCCGATCCAAATTCTTTGGGGATTCTTGGATCAGGACCAACTGATAACAGACGTTTTGGTAATGAGAAGCCTTCTAGGATGCGTCAAAGTGGTTATCCTCCCCGACAAGGTTTCTCATCAGTTATCAAGTAG 5292 0.4138 MAFFRNYSNETVAQSVLDEKGQGQNIDRVHSSVANEYVDATSSEKDFESKVDGQYQSDGDTNDAGLQNEAAAADDIGLRISNLQPSGRRTAMAGKWGSTFWKDCQPMGHRNGSESEQDSKCRFDCKNEEALEDNSSDGREVDKVQKGQNDVPADEMSSDDYYEQDGEDQSDSLHYRGLNHSSVLNSQPQSRPVAVNMARNSKASNDNEYDDDEDGDNDGDADYEDEDEEEEDDDPDDADFEPDYGVTSSRTANKYQDKDWNGEDSDEDDNSNDDLDVSDEDDAYYMKKPKGRLRGNSGRGLKPTKEHKSFPAPGRRKRGRTLLEDEDSYEKDSENDSDEDFKSMTRRGAHLRKSKGGQSSTTANIIGRNSELRTSSRSVRKVSYVESEESEEIDEGKKKKSQKEEIEEEDCDSIEKVLWHQPKGMADEALKNNKSTEPILLSHLFDFEPNWNEMEFLIKWKGQSHLHCQWKSFSDLQNLSGFKKVLNYTKKVMEEVKYRNMFSREEIEVNDVSKEMDLDLIKQNSQVERIIAYRIGKEGSGDVMPEYLVKWQGLSYAEATWEKDVDIAFAQDAIDEYKAREAAAAIQGKMVDMQRKKSKASLRKLDEQPGWLKGGQLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIYGPFLVVVPLSTLSNWAKEFKKWLPDLNVIVYVGTRASREVCQQYEFYTNKKTGRTILFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSAKNKLLITGTPLQNSVEELWALLHFLDPDKFKNKDDFVQNYKNLSSFNEMELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGNRSTNDCGKLERLILSSGKLVLLDKLLEKLHETNHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEENILKRAKQKMVLDHLVIQKLNAEGRLEKKESKKGSYFDKNELSAILRFGAEELFKEDKNEEESKKRLLSMDIDEILERAEKVEEKETGEEGNELLSAFKVANFGSAEDDGSFWSRWIKPEAVAEAEDALAPRAARNTKSYAEANQPERISKRKKKAAEPQERAQKRRKADYLVHLVPRIEGAAAQVRGWSYGNLPKRDASRFSRAVLKFGNPSQIGSIVMEVGGTIEAAPTEAQIELFDALIDGCREAVKEGNLDPKGPMLDFFGVPVKANEVLNRVQELQLLAKRISRYEDPIAQFRVLMYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRASALLEMELVAVGGKNTNTKASRKTSKKEKERENLMNISISRSKDRKGKPGFPVTNVQMRKDRSHKPHRVEPLVKEEGEMSGNEEVYEQFREVKWMEWCEDVMKTEIKTLNRLHKLQTTSANLPKDLVLSKIRKYLQLLGRRIDQIVLEHDKEQYKQDRMIMRLWNYISTFSNLSGEKLRQIHSKLKQEQDEDGGVGSSHVNGSAWGPGDKDSDPGQFPSFHRHGERPPRGYKNMSAYQTAEPVSKSHDAGKFEAWKRRRRADNINTHSLTQPLPQRPMSNGSRLPDPNSLGILGSGPTDNRRFGNEKPSRMRQSGYPPRQGFSSVIK* 1764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 1693 1763 - -
Vvi6g1196 1763 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 848 1078 - -
Vvi6g1196 1763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1122 IPR027417 -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 1477 1503 - -
Vvi6g1196 1763 ProSiteProfiles Chromo and chromo shadow domain profile. 525 589 IPR000953 -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 1701 1722 - -
Vvi6g1196 1763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 838 IPR027417 -
Vvi6g1196 1763 Gene3D - 848 1078 IPR027417 -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 39 66 - -
Vvi6g1196 1763 Pfam SNF2-related domain 636 905 IPR000330 GO:0005524|GO:0140658
Vvi6g1196 1763 SMART ultradead3 613 812 IPR014001 -
Vvi6g1196 1763 FunFam protein CHROMATIN REMODELING 5 isoform X2 527 579 - -
Vvi6g1196 1763 CDD CD1_tandem 412 490 - -
Vvi6g1196 1763 SMART chromo_7 523 582 IPR000953 -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 354 381 - -
Vvi6g1196 1763 Gene3D - 527 579 - -
Vvi6g1196 1763 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 181 1670 - -
Vvi6g1196 1763 SMART DUF4208_2 1516 1621 IPR025260 -
Vvi6g1196 1763 ProSiteProfiles Chromo and chromo shadow domain profile. 412 500 IPR000953 -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 1651 1665 - -
Vvi6g1196 1763 SMART helicmild6 963 1047 IPR001650 -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 262 280 - -
Vvi6g1196 1763 CDD SF2_C_SNF 924 1058 - -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 130 149 - -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 207 241 - -
Vvi6g1196 1763 FunFam Photoperiod-independent early flowering 1 587 861 - -
Vvi6g1196 1763 Gene3D - 1342 1452 - -
Vvi6g1196 1763 Gene3D - 608 847 IPR038718 -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 1198 1230 - -
Vvi6g1196 1763 FunFam Chromo domain-containing protein 1 400 525 - -
Vvi6g1196 1763 Pfam Chromo (CHRromatin Organisation MOdifier) domain 526 580 IPR023780 -
Vvi6g1196 1763 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 937 1088 IPR001650 -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 1210 1230 - -
Vvi6g1196 1763 Coils Coil 1130 1150 - -
Vvi6g1196 1763 SUPERFAMILY Chromo domain-like 408 492 IPR016197 -
Vvi6g1196 1763 Pfam Domain of unknown function (DUF4208) 1529 1620 IPR025260 -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 175 203 - -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 382 409 - -
Vvi6g1196 1763 Gene3D - 397 525 - -
Vvi6g1196 1763 SUPERFAMILY Chromo domain-like 504 580 IPR016197 -
Vvi6g1196 1763 Pfam Helicase conserved C-terminal domain 935 1047 IPR001650 -
Vvi6g1196 1763 CDD CD2_tandem 523 579 - -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 1620 1669 - -
Vvi6g1196 1763 MobiDBLite consensus disorder prediction 130 409 - -
Vvi6g1196 1763 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 629 801 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1196 Vvi-Chr6 17025722 17065564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1196 639 1074 RAD5 or RAD16-like Gene Family AT1G02670 24.806 2.51e-34 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi6g1196 SNF2_N 1.9e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1196 K11367 - vvi:100261898 3311.16