Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1179 ATGGTGGGTCTCCTTCTAACTGCTCTTTTACTGCACTTTCTTCCTCAATTTTCTTGTCTATCTCCTGATGAAGCCTCCTTCAGTCTCTCCTACAATGGAGGGAGGGTAATGACTGAACCAGTGGCTGTTTCTCTTCTATGGTTTGGTACTGGATGGCAAGAGTCTGGTAGAGAAGCTATTCGAAATGCCATAGCTTCTGTAACTGCCTCTGGATACCCAAATGAAGATTCTGAGGTACCCACATTAGGAAACTGGTGGGAGATCATTAGACAGTATAAAGATGGTTCGGGTACTCCTGCAACAGGCAGAGTAGATGTTGGTGCAGAATGCTTCTACACCGGCCCCCAGCTCAACATGACTCAAGACCAGGTACTTGGTATCGGAATGGCTGTTTTTAATGAGACTGCAGTCAATGGATTTGGTGGGAACCTGAACTGTACTCGGGTTTTTGAAGTGAGCGATAAGAGTATTTATCACATCGTGTTTTCCCACACTGTCATGTTCTTGGATAGAAGGGAGCAGAGGGAACTAATGGATAGGTGCAGTGGGGAGTTGCAGGTAGAGGTGTCTGCAAGCAACATGGTGAAAATGGTATGGGCGAGAGCCCCTCAAAACATCATTGATCAGTGCTCAATGTTTTTCCATGCCAAGTCTTATTTGGGTCCCCCAAATGGGGATGAAAAGATAGATAGCTTGGTAGGACATATGCTGGCCAACATCGCTAAGGAGGTTACCAATGGGGATGGAAAAGGATGGATCGGTAACGATGGAAGTGGAATGACAGTCAGTACCACTTGTGCTTTCATGTTCAAACGAGACGAAGAGGGTCCTCCACTATTCATGAATGAAGAAAAGACCCTAACTTTTAATGCAGTTGGAGTCAATGGTTATAGATATACGGTGCCATACATTTGGGACCAGAAAATCAGAAACTGTGCCTTGAAACCCTCGGAGGTGTGTGGAAGTGATGGTCTGATGTTCAGAAAGCCAAAAGGGCATTTGAATGCAGGAGTGGTGGTAAATCACACAAATGGTTTGCAGCCTTACGCCCCAAATCAGAAGTGTCAATGGAAAATCGAGTTTTCATCTGCAAAGTTCATCAGTTTCACCTTCAACTACCTCCTGGTTGCAGCAGGTAGTGATGATCATGTCATGATCTGCCCCTCGGATTCAAAACCCACAAGGTGCACTGTGTTTCAAACAGATGATGAACAGTCACTCACAGACTTCAGGATCTTTGGTTCAAAAGCTTATATCGAGTTTGTGAGTGGCGAACACGTATCGTCAGAGTCGAGAGGATGGGAGCTCAGATATTCTGCAGGTCTCTGCGATGGAAAGGAAGATGTTTATGATCATAAAGGTGTAATCGGCTACACTTCATCTACTGGCTTTTCCTACGTAGAAGGACTTCGTTGCCAATGGGTTCTTCATGGAAAACCAGGGACTCTTGTATCATTGAACTTTACCCGTATCAACATCTCAAAAGATCTGGATTTCCTTGCTATACATGATGGCCTGATGCAGCAGATTGCTAACTTCTCTGGGTTTTACTCAGGTTCTAGTCTCCCTCGAATGAACTTGATGGGTGAGATTATGGTTGCATTTTCCATCCAGACAGATGCAGGAGCAGGTTGGTCAGCTGATTTTTACATAGCTTCACCTGCTGATCGGAACAAAAGACCCTTGCTTGTCATTGTTGCTGTTGTCCTGGTGGTTGTTGGAATCGGCTTCTTGCTTGCTTTGGTAGGATTATGGTTACTTAGGAAAAGAAAGCATACAAACAGGGCCGACTCAAATGAGAACCTTACAGTGATAAGAGTAGCGGTTAATGGGCATCAGAATCAAATTGGGGAAGGGCCCTCTGCAACCGTTTACAGAGCAGATTTAGCAGATGGGAGTTCAGTAGCAGTCAAATCTCCAAGAGAGGTGACTTCTCAAACAAAACTAGAAGAGGAGGTTTTGCTCAAATCCTCTTGTCACCCCAACATTATTTCCCTAATTGGGTATGCTGAGGATGGAGTTCAGAGACGATATTTGGTGTTTGAGTTCATGGGGAGGGGAAGTTTGAACTGGAACTTGAGGGAAAGAGGAGAAACACTGCAGTGGGAGAAGAGGTTAACAATAGCCTTACAAATCTCCTCAGCAATCCAAATGCTGCACATATACTTGCAGCCACCTGTATACCATGGAAATATAAAATCTGAAAACATTCTTCTTGACGAGTTCTACAATGCAAAATTAGGAGGGTTCGGCACTGCAAACTATTGCAAAAACGATGGGATAAATCCGGAAAAACCATCAGAAATGGCAGAAGATATTTCGAGTTTCGGACTCGTGTTAGCTGAGCTGCTAAGAGGGGAGCCTCTGTTGAATAGACATGCTTCGGAATTTTTCAGGAGTCTCAAAGAATTTAATGAGCTAGATGGGGGCGGCCAAGAGTGCCTTGATCCAAAGTTGGATATTCCCAAGGAAGAATGCAAGATAATGAGTTTGGCCAAGTTGGGTGAAATTGCAAAATGGTGCATTGGTGGAAGCCAGGAAGTTGGAGGAGATCAAGCTACTCCCACTATAGGTGATGTTGTGTTGGGTTTGAAGCAGGTAAAGCAATTGTTTTTCTCAGTCCCAAGCTAA 2631 0.4447 MVGLLLTALLLHFLPQFSCLSPDEASFSLSYNGGRVMTEPVAVSLLWFGTGWQESGREAIRNAIASVTASGYPNEDSEVPTLGNWWEIIRQYKDGSGTPATGRVDVGAECFYTGPQLNMTQDQVLGIGMAVFNETAVNGFGGNLNCTRVFEVSDKSIYHIVFSHTVMFLDRREQRELMDRCSGELQVEVSASNMVKMVWARAPQNIIDQCSMFFHAKSYLGPPNGDEKIDSLVGHMLANIAKEVTNGDGKGWIGNDGSGMTVSTTCAFMFKRDEEGPPLFMNEEKTLTFNAVGVNGYRYTVPYIWDQKIRNCALKPSEVCGSDGLMFRKPKGHLNAGVVVNHTNGLQPYAPNQKCQWKIEFSSAKFISFTFNYLLVAAGSDDHVMICPSDSKPTRCTVFQTDDEQSLTDFRIFGSKAYIEFVSGEHVSSESRGWELRYSAGLCDGKEDVYDHKGVIGYTSSTGFSYVEGLRCQWVLHGKPGTLVSLNFTRINISKDLDFLAIHDGLMQQIANFSGFYSGSSLPRMNLMGEIMVAFSIQTDAGAGWSADFYIASPADRNKRPLLVIVAVVLVVVGIGFLLALVGLWLLRKRKHTNRADSNENLTVIRVAVNGHQNQIGEGPSATVYRADLADGSSVAVKSPREVTSQTKLEEEVLLKSSCHPNIISLIGYAEDGVQRRYLVFEFMGRGSLNWNLRERGETLQWEKRLTIALQISSAIQMLHIYLQPPVYHGNIKSENILLDEFYNAKLGGFGTANYCKNDGINPEKPSEMAEDISSFGLVLAELLRGEPLLNRHASEFFRSLKEFNELDGGGQECLDPKLDIPKEECKIMSLAKLGEIAKWCIGGSQEVGGDQATPTIGDVVLGLKQVKQLFFSVPS* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1179 876 Pfam Protein kinase domain 613 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1179 876 SUPERFAMILY Protein kinase-like (PK-like) 613 792 IPR011009 -
Vvi6g1179 876 Gene3D Spermadhesin, CUB domain 337 441 IPR035914 -
Vvi6g1179 876 ProSiteProfiles Protein kinase domain profile. 610 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1179 876 SMART CUB_2 330 441 IPR000859 -
Vvi6g1179 876 SMART CUB_2 443 552 IPR000859 -
Vvi6g1179 876 SUPERFAMILY Spermadhesin, CUB domain 462 534 IPR035914 -
Vvi6g1179 876 Pfam Phosphate-induced protein 1 conserved region 29 313 IPR006766 -
Vvi6g1179 876 SUPERFAMILY Spermadhesin, CUB domain 340 440 IPR035914 -
Vvi6g1179 876 Gene3D Spermadhesin, CUB domain 442 552 IPR035914 -
Vvi6g1179 876 ProSiteProfiles CUB domain profile. 443 552 IPR000859 -
Vvi6g1179 876 PANTHER OS01G0253100 PROTEIN 606 866 - -
Vvi6g1179 876 Pfam CUB domain 342 438 IPR000859 -
Vvi6g1179 876 Pfam CUB domain 449 547 IPR000859 -
Vvi6g1179 876 Gene3D Transferase(Phosphotransferase) domain 1 595 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1179 Vvi-Chr6 16884488 16887302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1179 605 868 Receptor kinase-like Gene Family AT2G23450 31.419 7.87e-28 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vvi6g1179 Phi_1 3.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1179 - - vvi:104879644 1748.41