Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1174 ATGTCGAGGACAGACAGGATGGCTTCGGATCTTAGCAGGACTGGCGCGGCCGAAAGGGACACAGAGCAGGCCCTTACTGCTCTTAAGAAAGGGGCATATTTACTCAAGTATGGAAGAAGGGGCAAGCCCAAGTTTTGTCCCTTTCGATTGTCCAATGATGAGTCTGTTTTGATATGGTTCTCAGGGAAAGAGGAGAAACTCCTAAAACTAAGTCATGTGTCCAGGATTATATCTGGGCAACGCACTCCGATTTTTCAAAGGTATCCACGGCCTGAGAAGGAGTACCAGTCATTCTCTCTAATATACAATGACAGGTCATTGGATTTGATTTGCAAGGATAAAGATGAAGCTGAGGTATGGTTTAGCGGTCTAAAAGCATTAATTTCACGTGGCGGCCATCATCGAAAATGGAGAACAGAATCAAGGAGTGATGGAATTCCATCTGAAGCAAATAGTCCTAGAACATATACTCGAAGAAGTTCTCCTCTGAATTCTCCATTTGGTAGTGCTGATAGCTTGCAAAAGGATGGTGGAGATCACCTTCGCCTTCATAGTCCATATGAAAGCCCCCCTAAGAGTGTCATGGAGAAGGCATTTTCAGATGTAATATTATATGCTGTTCCTCCTAAGGGTTTCTTCCCTTCAGATTCTGCCAGTGGTTCTGTTCATTCATTGTCATCAGGAGGCTCAGACAGTGTACATGGACACATGAAGGCAATGACAATGGATGCTTTTAGAGTAAGTTTATCAAGTGCTGTTAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGAGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGAAGTCATAGAGTTGGAAGCTGTTTTGGCATGAAAATGGATTCTTTGTTGCCTAAAGCTTTAGAATCTGCAGTAGTACTTGATGTTCAAAACATAGCTTGTGGTGGACGACATGCAGCTTTAGTGACCAAGCAAGGAGAGATCTTCTCCTGGGGAGAAGAGTCGGGCGGCAGGCTTGGCCATGGTGTAGATTCTGATGTTTTGCATCCAAAGCTTATTGATTCCCTCAGCAATACCAACATTGAGCTTGTAGCATGTGGGGAGTACCATACTTGTGCTGTAACCTTGTCTGGTGATCTGTACACATGGGGTGATGGAACTTACAATTTTGGTCTTCTCGGGCATGGAAATGAAGTGAGTCACTGGGTCCCAAAAAGAGTGAATGGGCCATTGGAGGGTATACATGTGTCATCTATCTCTTGTGGACCCTGGCACACAGCTGTTGTAACCTCATCTGGCCAGTTGTTCACTTTTGGTGATGGAACATTTGGTGTTCTGGGCCATGGAGATACAAAAAGTGTTTCAAAACCCAGGGAAGTGGAGTCCCTCAAGGGCCACCGCACTGTGATATCAGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTAGAAATCATGGTTGGGAATCCTAGTTCTAGCAACTGCTCATCAGGAAAGCTGTTTACATGGGGAGATGGTGATAAAGGTCGACTTGGCCATGGTGACAAGGAGGCAAAACTTGTGCCTACCTGTGTTGCTGCTCTTGTTGATCCCAACTTTTGTCGAGTTGCCTGTGGGCATAGTCTGACAGTTGCTCTTACTACCTCAGGCCATGTTTACACAATGGGAAGTCCTGTTTATGGGCAGCTAGGAAATCCCCAAGCTGATGGGAAACTCCCAACCCGTGTTGAAGGAAAACTTGCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCTTATCATGTTGCAGTTTTAACTTCAAGAACTGAAGTTTACACTTGGGGCAAAGGAGCAAATGGTCGATTAGGACATGGGGATACGGATGATAGAAATTCCCCCACATTAGTAGAAGCTTTGAAAGACAAGCAAGTCAAAAGTATTGCTTGTGGTACTAATTTTACTGCAACTATCTGCCTTCATAAGTGGGTCTCTGGTGTGGATCAATCTATGTGTTCTGGATGCCGTCTGCCATTTAATTTCAAAAGAAAACGTCACAATTGTTATAATTGTGGACTTGTATTTTGTCATTCATGCAGCAGTAAGAAGTCTCTAAAGGCCTCCATGGCACCAAATCCCAATAAGCCTTATCGTGTCTGTGATAATTGCTTTAGTAAATTAAGAAAGGCCATTGAAACTGACGCTTCATCTCAGTCCGCTGTGAGTAGAAGAGGAGTTACAAATCAGGGGCTAAATGAGCTAATTGATAAAGACGAGAAGTTGGATTCCAGATCTCGTGTACAACTTGCTAGATTTTCTTCAATGGAATCCTTAAAGCAGGCTGAAAGCCGAACGTCCAAGAGAAACAAGAAACTGGAATTTAATAGTAGTCGCGTCTCACCGATTCCAAATGGAGGTTCCCAATGGGGAGGAGCACTTAAATCTTTAAATCCAGTGTTTGGATCATCCAAGAAGTTCTTCTCAGCTTCTGTTCCAGGATCAAGAATAGTTTCTCGAACAACCTCGCCAATATCAAGGCGGCCCAGCCCACCTCGTGCCGCAACTCCAACCCCAACTCTTGAGGGACTTACCTCACCTAAAATTGTTGTGGATGATGCTAAGAGGACCAATGATAGCCTCAGCCAAGAGGTTATCAAATTAAGAGTACAGGTGGAAAATCTTACTCGTAAAGCCCAACTTCAAGAAGTTGAGCTTGAAAGGACAACTAAACAGTTGAAGGAGGCAATAGCAATTGCTGGGGAAGAAACTGCAAGATGCAAAGCAGCAAAGGAAGTGATCAAATCACTCACTGCACAATTGAAGGACATGGCTGAGAGGCTGCCTGTGGGGGCAGCTCGAAACACCAAGTCACCATCCTTCACTTCCCTTGGCTCCAATCCTGCTTCCAGTGACTTGTCCAGTCTGTCTATTGACCGAATTAACGGCCAAATAACAAGCCAAGAACCAGACTTGAATGGATCAAATGGTCAGTTGCTTTCTAATGGATCAAGCACCACCAACAATCGTAGTTCAGGTCATAACAGACTAGGACACTTGGAAGCAACAATAAGAAACGGGAGCAGAACGAAAGAATCTGAGCATCGTAATGATAATGAATGGGTTGAGCAAGATGAGCCTGGTGTCTATATTACACTTACCTCTTTACCTGGAGGTGTTAAGGATCTTAAACGAGTTCGCTTCAGCCGGAAGCGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCGGAGAACCGAGCAAGAGTACATGAACGGTACAACGTGCGAATGATTGACAAGTCAAGCGTTGGGGTTGGGAGTGAGGACTTAGCTCATTGA 3324 0.448 MSRTDRMASDLSRTGAAERDTEQALTALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKLLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRGGHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSADSLQKDGGDHLRLHSPYESPPKSVMEKAFSDVILYAVPPKGFFPSDSASGSVHSLSSGGSDSVHGHMKAMTMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGSHRVGSCFGMKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIDSLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDTKSVSKPREVESLKGHRTVISACGVWHTAAVVEIMVGNPSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVDPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPTRVEGKLAKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKQVKSIACGTNFTATICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFSKLRKAIETDASSQSAVSRRGVTNQGLNELIDKDEKLDSRSRVQLARFSSMESLKQAESRTSKRNKKLEFNSSRVSPIPNGGSQWGGALKSLNPVFGSSKKFFSASVPGSRIVSRTTSPISRRPSPPRAATPTPTLEGLTSPKIVVDDAKRTNDSLSQEVIKLRVQVENLTRKAQLQEVELERTTKQLKEAIAIAGEETARCKAAKEVIKSLTAQLKDMAERLPVGAARNTKSPSFTSLGSNPASSDLSSLSIDRINGQITSQEPDLNGSNGQLLSNGSSTTNNRSSGHNRLGHLEATIRNGSRTKESEHRNDNEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVHERYNVRMIDKSSVGVGSEDLAH* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1174 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 502 553 IPR000408 -
Vvi6g1174 1107 MobiDBLite consensus disorder prediction 770 804 - -
Vvi6g1174 1107 MobiDBLite consensus disorder prediction 1020 1035 - -
Vvi6g1174 1107 SUPERFAMILY RCC1/BLIP-II 268 659 IPR009091 -
Vvi6g1174 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 606 657 IPR000408 -
Vvi6g1174 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 383 437 IPR000408 -
Vvi6g1174 1107 MobiDBLite consensus disorder prediction 945 1035 - -
Vvi6g1174 1107 FunFam PH, RCC1 and FYVE domains-containing protein 1 240 491 - -
Vvi6g1174 1107 MobiDBLite consensus disorder prediction 950 1011 - -
Vvi6g1174 1107 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 662 724 IPR017455 -
Vvi6g1174 1107 SUPERFAMILY PH domain-like 20 128 - -
Vvi6g1174 1107 Pfam Transcription factor BRX N-terminal domain 917 951 IPR027988 -
Vvi6g1174 1107 ProSiteProfiles BRX domain profile. 1034 1089 IPR013591 -
Vvi6g1174 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 269 330 IPR000408 -
Vvi6g1174 1107 Pfam Unstructured region between BRX_N and BRX domain 958 1027 - -
Vvi6g1174 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 607 654 IPR000408 -
Vvi6g1174 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 382 434 IPR000408 -
Vvi6g1174 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 501 550 IPR000408 -
Vvi6g1174 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 331 379 IPR000408 -
Vvi6g1174 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 553 602 IPR000408 -
Vvi6g1174 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 437 486 IPR000408 -
Vvi6g1174 1107 Pfam Transcription factor regulating root and shoot growth via Pin3 1034 1088 IPR013591 -
Vvi6g1174 1107 CDD FYVE_like_SF 667 720 - -
Vvi6g1174 1107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 738 IPR013083 -
Vvi6g1174 1107 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 65 942 - -
Vvi6g1174 1107 Coils Coil 922 942 - -
Vvi6g1174 1107 MobiDBLite consensus disorder prediction 137 192 - -
Vvi6g1174 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 554 605 IPR000408 -
Vvi6g1174 1107 Pfam FYVE zinc finger 658 724 IPR000306 GO:0046872
Vvi6g1174 1107 CDD PH_PLC_plant-like 19 129 - -
Vvi6g1174 1107 Gene3D - 19 136 IPR011993 -
Vvi6g1174 1107 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Vvi6g1174 1107 PRINTS Chromosome condensation regulator RCC1 signature 543 561 IPR000408 -
Vvi6g1174 1107 PRINTS Chromosome condensation regulator RCC1 signature 333 349 IPR000408 -
Vvi6g1174 1107 PRINTS Chromosome condensation regulator RCC1 signature 601 622 IPR000408 -
Vvi6g1174 1107 PRINTS Chromosome condensation regulator RCC1 signature 383 399 IPR000408 -
Vvi6g1174 1107 PRINTS Chromosome condensation regulator RCC1 signature 314 327 IPR000408 -
Vvi6g1174 1107 PRINTS Chromosome condensation regulator RCC1 signature 440 454 IPR000408 -
Vvi6g1174 1107 PRINTS Chromosome condensation regulator RCC1 signature 424 440 IPR000408 -
Vvi6g1174 1107 Coils Coil 866 907 - -
Vvi6g1174 1107 Gene3D - 217 392 IPR009091 -
Vvi6g1174 1107 FunFam Putative E3 ubiquitin-protein ligase HERC1 664 732 - -
Vvi6g1174 1107 SUPERFAMILY FYVE/PHD zinc finger 658 728 IPR011011 -
Vvi6g1174 1107 SMART fyve_4 656 725 IPR000306 GO:0046872
Vvi6g1174 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 424 434 IPR000408 -
Vvi6g1174 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 317 327 IPR000408 -
Vvi6g1174 1107 FunFam PH, RCC1 and FYVE domains-containing protein 1 492 663 - -
Vvi6g1174 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 438 489 IPR000408 -
Vvi6g1174 1107 MobiDBLite consensus disorder prediction 144 171 - -
Vvi6g1174 1107 Gene3D - 393 654 IPR009091 -
Vvi6g1174 1107 MobiDBLite consensus disorder prediction 834 859 - -
Vvi6g1174 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 331 382 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1174 Vvi-Chr6 16830153 16854125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1174 926 1098 Major Intrinsic Protein MIP AT1G31880 35.326 1.47e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1174 - - vvi:100248282 2107.41