Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1173 ATGGATGAGCTTCAGATAGCCAGAGCAACAGCCCAGATTCTCCACCGACTGGAGCACTGGGGCAAGATCGTCGCCGATCATCGCCCGAGTGAAGCTGGAACTGGTAGGTTCGAGGGAGAGGAGCTCCAGCTGCGGAAGCTCAAGAGGATGACGTACGAGCTGGCTCAGTCGCGGGCGGCGGCGGATTGCCGGGACTTCGGGGCGGTGTTGAGGGAGACGGAGCTGGGAGTGATGGTGGAGATGGGGAGGATATTGGCGGAAACGGTGGATCCGGTGTTGGAGGGGCTGAGGAGGGAGACGGTGGCGGAGGAGGGGGAAGTGTGTGGGGTGTGTCAGGAGGAGATGGAGAGTGGGGATGAGGATGTGAAGAGCATGGGGTGTGCGCACAGGTTTCATGGGTTTTGCATATGGCGGTGGCTGACGGAGAGGAAATCTTGCCCTCTGTGCAGAAATCCCCTCGATCCCACTGTCCAATACCTCAAAGTTTGA 489 0.5951 MDELQIARATAQILHRLEHWGKIVADHRPSEAGTGRFEGEELQLRKLKRMTYELAQSRAAADCRDFGAVLRETELGVMVEMGRILAETVDPVLEGLRRETVAEEGEVCGVCQEEMESGDEDVKSMGCAHRFHGFCIWRWLTERKSCPLCRNPLDPTVQYLKV* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1173 162 SMART ring_2 108 149 IPR001841 -
Vvi6g1173 162 SUPERFAMILY RING/U-box 96 156 - -
Vvi6g1173 162 Pfam Ring finger domain 108 150 IPR001841 -
Vvi6g1173 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 159 IPR013083 -
Vvi6g1173 162 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 63 150 - -
Vvi6g1173 162 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1173 84 153 C3H Transcription Factor Family AT5G05530 35.714 5.70e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1173 - - vvi:100852487 323.553