Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1172 ATGGAAGAATCAAGTGAAGTGCACTCTGAAGAGAACAAAATTTGTGAGGAGAAGAACAAGAAAAGAAGGCTTAAGACACCATCCCAGGTTCAGGCTCTAGAGAAATTTTATAATGAACACAAATATCCCACAGAGTCCATGAAATCAGAACTTGCAGAAGAGATAGGATTAACAGAAAAGCAAATTTCTGGATGGTTTTGCCACAGAAGGTTGAAGGACAAAAAGCTATTGGAAGATGAAGCAGGTGCAAATGGAAGGCAAGATCGTTCAAGTGGTGTTATACAGGATCGTGGCAGTGGATATAGACAGGATTCATGTGGCAGCACCAAGCACGGGGATTATAGGCATATTGATCCTAGGGAAGTTGAAAGTCGAAGGTTCTATGGGCAAGAATTTTCAGCTGGAGACCTTAATTATGAGCACAGGAGTCATTATACTGGAAATTTTAGTGGCAGGGGTGACACATCATCAGAAAGTAGCTCAGATTTACAAGATAGGTTTTTTCCTCAGAATGAAGATCCTTTTGATGTTGAAACTTCAAAACTTCCAACAAGGAGTGGAATTGTCATGCCAATAAATACCAAAGGTACCCAAAACAGGGGATTTGTTCGGCCATCAGGATATTTGAAAGTGAAGGGTGAAATTGAGAATGTTGCTATTACTGCTGTTAAGAGGCAACTAGGGAGGCATTATCGAGAGGATGGTCCACCACTTGGTGTTGAATTTCAGCCACTCCCCCCTGGTGCTTTTGAGTCATCAATTAGGGATCAAGATGATGAACCCTACTATGTTGGCAATTCCATTATGTCCCAATCCCCGGATAATCCCGGAGTTCCCAAACCACCCAGTCTTAGTACTAGATATGAAGTGTGTAGTTCCAAGTTGGCTTCTCAAAATTCTTGTATGGAAGAGGCAAACTTTGGAACCATGCATGGATTTGATAGTAGGGACAATTACTCTAACCGCCAATTAAAGCAAAAGGGTTCTTTTCCTAATTATAGCAATTTGTCCCCTGGCTGGAACTTTTCCAAGGATATGCATGAAGATGCTGCTGGAGAAACCTCCTTTGTTAATAGCAACAAGAACTATGAGATGAGGTCTAATCCTGGTATTGAAGGGATGAGATTGAGTTCTGTTTCTAATCGTCGCCTTCATCCCTATGGTGGAAAAGTTACTAGTGAACAAACAGACTCTTGGTTGCATGAGTATGATGACATCAGGCCCAAGATTGTCCAGCAGAAGGAATACTTGAAATCTAAACCTTCAAATTTGATACTTCAGCAAAGTGGGTCTTGTGATGATGAAGGGAGAGGGCAGTTGAGAAATATGGCAAAGATGGAAGAAGTTTGTCGAGAAAGGAGAGCAATGAGAGAATATTCTGATCCAGTAGGTGAAAAGGTGCAACCAACAAATGAAATGAGAGTTGCTAAGAGAGTTAGAGATGAGTCTCCACCACTGGATTATGCAAAAAAATCATCATTTTCTGAAACACCAACATGGGGAAATCAGATCAAAGGGTCTGCTATGGAGATGCCATCTAGTTTCAGTGAGGATGAAACTGCCGAAACCAGTTCTTCCATGGATTGA 1587 0.4134 MEESSEVHSEENKICEEKNKKRRLKTPSQVQALEKFYNEHKYPTESMKSELAEEIGLTEKQISGWFCHRRLKDKKLLEDEAGANGRQDRSSGVIQDRGSGYRQDSCGSTKHGDYRHIDPREVESRRFYGQEFSAGDLNYEHRSHYTGNFSGRGDTSSESSSDLQDRFFPQNEDPFDVETSKLPTRSGIVMPINTKGTQNRGFVRPSGYLKVKGEIENVAITAVKRQLGRHYREDGPPLGVEFQPLPPGAFESSIRDQDDEPYYVGNSIMSQSPDNPGVPKPPSLSTRYEVCSSKLASQNSCMEEANFGTMHGFDSRDNYSNRQLKQKGSFPNYSNLSPGWNFSKDMHEDAAGETSFVNSNKNYEMRSNPGIEGMRLSSVSNRRLHPYGGKVTSEQTDSWLHEYDDIRPKIVQQKEYLKSKPSNLILQQSGSCDDEGRGQLRNMAKMEEVCRERRAMREYSDPVGEKVQPTNEMRVAKRVRDESPPLDYAKKSSFSETPTWGNQIKGSAMEMPSSFSEDETAETSSSMD* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1172 528 MobiDBLite consensus disorder prediction 471 487 - -
Vvi6g1172 528 SMART HOX_1 18 80 IPR001356 GO:0003677
Vvi6g1172 528 MobiDBLite consensus disorder prediction 88 106 - -
Vvi6g1172 528 MobiDBLite consensus disorder prediction 78 122 - -
Vvi6g1172 528 MobiDBLite consensus disorder prediction 1 27 - -
Vvi6g1172 528 MobiDBLite consensus disorder prediction 143 167 - -
Vvi6g1172 528 MobiDBLite consensus disorder prediction 490 528 - -
Vvi6g1172 528 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Vvi6g1172 528 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Vvi6g1172 528 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 528 - -
Vvi6g1172 528 MobiDBLite consensus disorder prediction 459 528 - -
Vvi6g1172 528 Gene3D - 9 92 - -
Vvi6g1172 528 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Vvi6g1172 528 MobiDBLite consensus disorder prediction 139 180 - -
Vvi6g1172 528 CDD homeodomain 20 75 IPR001356 GO:0003677
Vvi6g1172 528 MobiDBLite consensus disorder prediction 108 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1172 Vvi-Chr6 16796711 16815249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1172 3 528 Homeobox Transcription Factor Family AT4G03250 41.495 6.73e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi6g1172 Homeodomain 4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1172 - - vvi:100265339 1070.84