Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1167 ATGTGGTCTTCCTCCTCTCGCCAGATCAATTACGGCCTCCCACATGAGATGGGCATGGTGGGTCTTCGCGACGTCTTCGTCGTCGCTCCGGCCTCCTCCTTCCACCACAACAACCAGCACGACCCCATCATCTCCGATCCTCACGCCATCAATGGCTCGAATGCAGCCACCGCTCTTGGTGTTGGGGTCGGCGTCGGTGTCATCCCCCTCCTCACTGCCGCTCCTTGCCTCGCTCCGTCGAGCATGGGTGGCGTCGACGAAGCAGATATGCTAGGCCATCGAAGCAAAGGCGGTGGAATACAGTTCTGGCAAAACCAGCAAACCCAGCACGCCAATTATCTCAAGAAACCCATGATTCTCGATCACAATAGCTCTTCCAATTTGCTCAGCTGTGGCGTTGGTGGAGTCGGTGCTTCGGGTCCTACAACCGCGGGTGGGACGACGTGCCAGGACTGTGGAAATCAAGCCAAGAAAGACTGCAGTCATCGCCGGTGCAGAACTTGCTGCAAAAGCCGTGGTTTTGATTGCGCTACTCACGTCAAGAGCACATGGGTTCCGGCCGCTAGGAGGCGAGAGCGACAGCTCATGGTCTCCGTCACTCCCGGAGCAGGCTCTTCAGGGTCCACCTCCGGTGCTAAGAAACCTAGGCTCATCACTTCACAAACTACTACAACATCTCATACTTCCACTTCCAATACAACTCCTCCAAGAAGCTTTGATACTAGTTCGAGTCATCAAGATGCGAGTTTTAAAGAGGCATTGCCGGGGCAAGTCCGAGCCCCGGCCGTGTTCAAGTGTGTTAGAGTGACTGCGGTGGATGATGGCGAAGACGAATATGCTTACCAGGCAGTGGTGAAGATTGGTGGGCATGTGTTCAAAGGGTTTCTATACGATCAAGGGTTGGAAACAAGAGATGGGTTTCCCAATATCTCAGAGCTGCATTTGGGTGGTGGTAGTGGTAGTGGTGGCGGTGGTGGGGCTAGGAATGGGGGGACTTCCTCCCCAATTCTCGACCCTCCTGATATCTATGCGGCTTCGGGAGGAGGCCTGCTTGGAGGTTCAAGCTACGGTAACGCAATAAATTGA 1086 0.547 MWSSSSRQINYGLPHEMGMVGLRDVFVVAPASSFHHNNQHDPIISDPHAINGSNAATALGVGVGVGVIPLLTAAPCLAPSSMGGVDEADMLGHRSKGGGIQFWQNQQTQHANYLKKPMILDHNSSSNLLSCGVGGVGASGPTTAGGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMVSVTPGAGSSGSTSGAKKPRLITSQTTTTSHTSTSNTTPPRSFDTSSSHQDASFKEALPGQVRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGLETRDGFPNISELHLGGGSGSGGGGGARNGGTSSPILDPPDIYAASGGGLLGGSSYGNAIN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1167 361 MobiDBLite consensus disorder prediction 198 250 - -
Vvi6g1167 361 NCBIfam LRP1 C-terminal domain 254 301 IPR006511 -
Vvi6g1167 361 MobiDBLite consensus disorder prediction 314 338 - -
Vvi6g1167 361 NCBIfam putative zinc finger domain, LRP1 type 148 190 IPR006510 -
Vvi6g1167 361 Pfam Domain of unknown function (DUF702) 146 302 - -
Vvi6g1167 361 MobiDBLite consensus disorder prediction 199 250 - -
Vvi6g1167 361 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 33 346 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1167 Vvi-Chr6 16711150 16712324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1167 9 342 C2H2 Transcription Factor Family AT5G12330 54.624 6.05e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vvi6g1167 DUF702 3.3e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1167 - - vvi:100251674 653.669