Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1165 ATGACCACTGTCCTCAACATCGACGGTGACCAGCAGCTCCTCGACACTTTTCAACATCTGTCCGTTCAAGATCAGAGGGAAGTGAAAGAGAGTAGAAATGGGAGTCATGGGGGTGTATGTGCGATCTGTCTGGATACGATAGTGCTTCAGGAAACTGCTATGGTAAAAGGTTGCGAGCACGCATACTGTGTGACATGCATCCTTCGTTGGGCCACATATAGTCAGAAACCAACATGCCCACAATGTAAACATCCTTTTGAATTTCTCAACATTCATCGCTCACTAGATGGCAGCATCCACGATTACATGTTCGAGGAGAGTGTGTGTCTTCTCCTTAGAGCTGCATGGTTTAAACCTTTGATTGTGGAGGAACAAGAAGATATTTATGATGAGGAGGAATATTTTTATCCATATGAAATTAATGAAGTTGATATAGATGAAGATGATCTGGATGAGGTTTACTACAACAATTTGTCAAGTATCCGAATTGGGAATCGGAGATGGGGAACTAATGGATATATTAGGGCAGGACACCAAGAAGCAAGGCCAGTCTATCGACCAAATGCTCAGAGCTCAGGTGCTAGTTCATCTCGTGATTCTGGGAGTTCAGAGGCTAAGAAAGAGACAAAGGGGCGGCGGGCAAAGAGAGCATTGAAACGTGAAGCAGCAGATAAGGCAGCTGCAGAAAAACATGAACGACATTTGGTGAGGTTGGGCCGGAATTGA 726 0.4463 MTTVLNIDGDQQLLDTFQHLSVQDQREVKESRNGSHGGVCAICLDTIVLQETAMVKGCEHAYCVTCILRWATYSQKPTCPQCKHPFEFLNIHRSLDGSIHDYMFEESVCLLLRAAWFKPLIVEEQEDIYDEEEYFYPYEINEVDIDEDDLDEVYYNNLSSIRIGNRRWGTNGYIRAGHQEARPVYRPNAQSSGASSSRDSGSSEAKKETKGRRAKRALKREAADKAAAEKHERHLVRLGRN* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1165 241 SMART ring_2 40 82 IPR001841 -
Vvi6g1165 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 104 IPR013083 -
Vvi6g1165 241 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 241 - -
Vvi6g1165 241 Pfam Ring finger domain 40 83 IPR001841 -
Vvi6g1165 241 SUPERFAMILY RING/U-box 39 89 - -
Vvi6g1165 241 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Vvi6g1165 241 MobiDBLite consensus disorder prediction 201 236 - -
Vvi6g1165 241 MobiDBLite consensus disorder prediction 179 241 - -
Vvi6g1165 241 CDD RING-HC_Topors 40 86 - -
Vvi6g1165 241 ProSiteProfiles Zinc finger RING-type profile. 40 83 IPR001841 -
Vvi6g1165 241 MobiDBLite consensus disorder prediction 185 200 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1165 1 241 C3H Transcription Factor Family AT5G19430 56.809 4.59e-86 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1165 - - vvi:100260248 441.425