Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi6g1160 | ATGGCGGAGTACAGTGGCGCGATCTCTCTGTCCCGAGACATGTCTCACTCCTCTGATGATGACGATGAGGAGCAGAGCCCAGGGATCCTGGTGCCGTTCACTGGGGGCAGCGCCGGAGCTGGGTCGTCGAAGGTGAAGGTCAACTTCAAGGGAGGCAGCAGCACTGGAGGGGAAGGAGGGTCGTCGGCGGAGGCGCCGCGGAAGCCGAGAGGCCGACCACCTGGTTCGAAGAACAAGCCCAAGCCTCCCATTGTGATAACGAGGGAGTGTGAGTCTGGGATGAAGCCAATTGTGATCGAGGTGGCGCCCGGGAACGATCTGTTCGAGACGGTGGTGCAGTTCGCTCGTCGCCGCCGCGTGGGCATCACGATTCTTCATGGGTTCGGGACCATATCGAACGTGACCTTTCGCCAGCCGGTGCCCCACGCGCCGACTTACTCTCTCCATGGACCTCTGTGCATCATCTATATATCTGGGTGGTATCTGGGGTGTCCAACTCCTGCGACTCCTGCCACATCGAGGGCTTCGTTTTCTGTGTCTGTTGCAGGCACTCAAGGTCAGATTTATGGAGGGCAAGTTGCAGGAAAGGTGACAGCTTCTGGACCTGTGACTCTGATTGCCTCCACTTTCACCAACCCTTCGGTTCATAGGCTCCCATCTGATATAGAGGATACTGACGAAGGTAAGAACAATGGTGGTGCAAGCACTTCCGGAGCTGGGACTAGTGTGGCCATGAGTGGTGCTTACAGTGTTATTGCAGCTCCGCTGAACAGCCAGATGGCTCCCGATGTCATGCACTGGACCGCTACACCTCGTCCTCCCTACTAG | 828 | 0.5761 | MAEYSGAISLSRDMSHSSDDDDEEQSPGILVPFTGGSAGAGSSKVKVNFKGGSSTGGEGGSSAEAPRKPRGRPPGSKNKPKPPIVITRECESGMKPIVIEVAPGNDLFETVVQFARRRRVGITILHGFGTISNVTFRQPVPHAPTYSLHGPLCIIYISGWYLGCPTPATPATSRASFSVSVAGTQGQIYGGQVAGKVTASGPVTLIASTFTNPSVHRLPSDIEDTDEGKNNGGASTSGAGTSVAMSGAYSVIAAPLNSQMAPDVMHWTATPRPPY* | 276 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi6g1160 | 275 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 26 | 236 | IPR014476 | GO:0003680 | |
| Vvi6g1160 | 275 | Gene3D | - | 95 | 228 | - | - | |
| Vvi6g1160 | 275 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
| Vvi6g1160 | 275 | CDD | DUF296 | 95 | 210 | IPR005175 | - | |
| Vvi6g1160 | 275 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 95 | 211 | IPR005175 | - | |
| Vvi6g1160 | 275 | MobiDBLite | consensus disorder prediction | 216 | 239 | - | - | |
| Vvi6g1160 | 275 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 92 | 223 | - | - | |
| Vvi6g1160 | 275 | ProSiteProfiles | PPC domain profile profile. | 91 | 231 | IPR005175 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi6g1160 | Vvi-Chr6 | 16617200 | 16618027 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi6g1160 | 61 | 275 | AT-hook Motif Nuclear Localized (AHL) Family | AT5G49700 | 41.991 | 6.18e-47 | 156 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi6g1160 | - | - | vvi:100248254 | 483.796 |