Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1159 ATGGCAGCTTGCTTCCAACAGCCGGCCCAGCTGGAGGATGACTCAACCGTACTCTTTTCAAATTCGGACTCCCATGAAGGCTCCACCAGCCCTTCCTCTTCCTTCTACCACTCACCGCCACATGATCATCAGTCCAAAACTACATACAGACTAACTGTAAAAACTCTTTCTCACACCATTTATCCAGTCCAGTCAATGCCTATTTCCTTCTGTCGTCCCTGGAAAAAGCCTAAGCCCATCAACATACTCAAAGGGGTCTCCTTCACTGCCAAAAGCTCTGAAATCCTTGCCATTGTTGGCCCAAGTGGTACCGGGAAATCTACCCTTCTCCGCATTATCTCAGGCAGGGTAAAGAATGAAGAATTTGATCCAAAGAGTATCTTACTCAATGATCATCCAATCACTTCCCCAGCTCAGTTAAGAAAGATATGTGGGTTCGTGGCCCAGGAGGACAACCTGCTTCCTCTACTCACTGTAAAGGAAACCCTAATGTTCAGTGCCAAGTTTAGGCTTAGGGAAATGAGTGGAAAAGAGAAAGAAGAGCGGGTCGATAGCTTGATGCAAGAGCTTGGCCTTGTGCATGTTGCAGATAGTTTTGTTGGAGACGAAGAGAATAGAGGTATATCTGGCGGAGAAAGGAAAAGGGTGTCGATCGGAGTCGATATGATTCATGATCCCCCAATATTACTTCTTGATGAGCCAACTTCAGGCCTCGACAGCACTTCAGCACTTCAAGTGATTGAGCTGCTTTCATCTATGGCAAGAGCGAAGCATAGAACAATAGTTCTATCTATCCACCAACCGAGCTATAGACTTCTTCAATACATTTCTAAATTCTTGATCCTCTCTCGTGGTTCAGTTGTCCATATTGGTAGCCTTGAATTGCTGGAGGAAAAAATAGACAAAATGGGATTCAAAATCCCATTGCAACTAAACCCTCTAGAATTTGCTATGGAGATCATATACAGCCTGGAAGATTCAAATCCCAATTCTTATCACAGTGATATAGAAGATAAGAAGCCATCTTCCTACTCAGCATGGCCGGAAGAAGAGGTGGGCAGAATTCAAAAGCAAAATGATGGCAGCCAGATGGGTAATCACTATCTTTGGAGTTTTTTTGAGATTATGTTCCTCTGCTCGAGATTTTGGAAAATTATTTATAGAACAAAGCAGCTCTTCTTGGCAAGAACAATGCAAGCGCTTGTTGGGGGATTTGGGTTGGGAAGTGTATACATAAAGGTGAGGAAGGATGAAGGTGGAATCGCAGAGCGGTTGGGTCTCTTCGCTTTTAGTCTTAGTTTTCTCCTTTCATCTACAGTCGAAGCCCTCCCAATTTACCTTCAAGAGCGGCGGGTCTTAATGAGGGAATCTTCAAGGGGAGCTTACAGAATTTCCTCCTACATGATTGCCAACACTATCATCTTTCTTCCCTTCTTGTTTACAGTGGCTATTCTTTTTGCGGTGCCGGTTTACTGGCTTGTAGGGCTAAACCCCTCCATTGCTGCATTCACATTCTTCACTTTTGTGGTTTGGCTGATTGTCATGATGGCTAGCTCTCTAGTACTCTTCTTAAGTGCAGTCTCTCCGGACTTCATTTCCGGAAATTCTCTGATCTGCACTGTTCTTGGCGCCTTCTTCCTCTTCTCCGGCTACTTTATCCCAAAAGAGAGCATCCCCAGATACTGGCTCTTCATGTACTATGTCTCCCTTTACAGGTATCCGCTGGATTCCCTACTCATAAACGAGTATTGGAGTATGAAGGGTGAGTGGCTGGACAAGGACACAAGGTGGATGAATGTGGGAATCATGTTTGGTTTCTTCATCTTCTATCGCTTGCTTTGTTGGATCATTCTGTCTCGAAGGGCTTCAAAAACAACCATTTAA 1884 0.4443 MAACFQQPAQLEDDSTVLFSNSDSHEGSTSPSSSFYHSPPHDHQSKTTYRLTVKTLSHTIYPVQSMPISFCRPWKKPKPINILKGVSFTAKSSEILAIVGPSGTGKSTLLRIISGRVKNEEFDPKSILLNDHPITSPAQLRKICGFVAQEDNLLPLLTVKETLMFSAKFRLREMSGKEKEERVDSLMQELGLVHVADSFVGDEENRGISGGERKRVSIGVDMIHDPPILLLDEPTSGLDSTSALQVIELLSSMARAKHRTIVLSIHQPSYRLLQYISKFLILSRGSVVHIGSLELLEEKIDKMGFKIPLQLNPLEFAMEIIYSLEDSNPNSYHSDIEDKKPSSYSAWPEEEVGRIQKQNDGSQMGNHYLWSFFEIMFLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYIKVRKDEGGIAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMRESSRGAYRISSYMIANTIIFLPFLFTVAILFAVPVYWLVGLNPSIAAFTFFTFVVWLIVMMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPRYWLFMYYVSLYRYPLDSLLINEYWSMKGEWLDKDTRWMNVGIMFGFFIFYRLLCWIILSRRASKTTI* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1159 627 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 38 612 - -
Vvi6g1159 627 Gene3D - 66 313 IPR027417 -
Vvi6g1159 627 ProSitePatterns ABC transporters family signature. 208 222 IPR017871 GO:0005524|GO:0016887
Vvi6g1159 627 SMART AAA_5 92 294 IPR003593 GO:0016887
Vvi6g1159 627 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 63 309 IPR003439 GO:0005524
Vvi6g1159 627 MobiDBLite consensus disorder prediction 19 47 - -
Vvi6g1159 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 293 IPR027417 -
Vvi6g1159 627 Pfam ABC-2 type transporter 266 328 IPR043926 GO:0140359
Vvi6g1159 627 Pfam ABC-2 type transporter 375 583 IPR013525 GO:0016020|GO:0140359
Vvi6g1159 627 Pfam ABC transporter 83 236 IPR003439 GO:0005524
Vvi6g1159 627 FunFam ABC transporter G family member 23 74 307 - -
Vvi6g1159 627 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1159 Vvi-Chr6 16610144 16612096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1159 80 299 Calmodulin-binding Proteins AT2G36910 29.646 6.26e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1159 K05681 - vvi:100243136 1199.5