Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1139 ATGGGCAACTGTTGCTCCCAAGGCAACACCAACGATGGCCCAGCTAATGACAAGGGAGAAACCATCCCTGAGCCTACGACCAACCCGGAAACTGCTGCGCCTGAGAGTTCAGCCGCGCAGAATAAGCCTGCAGCCAGTTCCACTCCTGCTGCTTCATCCGGAGCGTCTACCAAGCCTAGCAAGCCAACCCCTATAGGACCTGTGTTGGGCAGGCCTATGGAAGATGTTCGTACCCTTTACACTATAGGAAAGGAGCTCGGTCGCGGGCAGTTTGGTGTTACCCATTTGTGTACCAGCAAGGCAACCGGCGAGCAGTTTGCTTGTAAGACAATAGCCAAGCGGAAACTTGTAAACAAGGAGGATATTGAGGATGTCAGGAGGGAAGTTCAGATCATGCACCATTTGACGGGTCAGCCTAATATAGTCGAGCTTAAGGGTGCCTATGAGGACAAGCAATCGGTTCATCTGGTGATGGAGTTGTGTGCAGGAGGAGAGCTCTTTGATCGTATTATCTCAAAGGGGCATTACACCGAGCGTGGTGCAGCATCTTTGCTGAGGACTATTGTTCAGATTGTCCACACCTGCCATTCCATGGGAGTTGTCCATAGGGATCTCAAGCCTGAAAATTTCCTTCTGCTGAACAAGGATGAGAATGCACCTCTCAAGGCTACAGATTTCGGTTTATCCGTGTTCTTCAAACAAGGAGAAGTATTTAGAGATATTGTTGGTAGTGCATATTACATTGCACCTGAAGTATTGAAGAGAAGATATGGACCAGAGGTCGATATATGGAGTGTTGGGGTTATGTTGTATATCCTTCTATGTGGAGTTCCTCCCTTCTGGGCAGAATCGGAGCATGGGATATTCAATGCAATCTTACGCGGCCACATTGATTTTACAAGCGACCCATGGCCCACTATTTCATCTGGTGCCAAGGATCTTGTCAGAAAGATGTTAACTTCAGACCCAAAGCAGAGGATAACAGCATTCCAAGTTCTGAATCATCCATGGATTAAGGAGGATGGAGAAGCACCTGATACTCCTCTTGACAATGCAGTTTTTGAAAGGTTCAAACAGTTTAGAGCAATGAACAAGTTCAAGAAAGTTGCTCTTCGGGTCATTGCTGGCTGTCTATCAGAGGAAGAAATCATGGGATTGAAGCAAATGTTTAAGGGCATGGACACTGATAATAGTGGAACCATAACACTTGAAGAGCTGAAGCAAGGTCTGTCCAAGCAAGGGACTAAGCTGTCTGAATATGAAGTTAAACAGTTGATGGAAGCTGCTGATGCAGATGGCAATGGAACCATTGACTATGATGAGTTTATCACGGCAACAATGCACCTGAACAGAATGGACAAAGAAGACCATCTTTACACAGCCTTCCAATACTTCGACAAAGATAACAGCGGGTATATTACAACCGAAGAGTTGGAGCAAGCTCTCCATGAATTTGGCATGCACGATGGAAGGGACATAAAAGAAATCCTTAATGAAGTTGACGGTGATAATGATGGCCGGATCAACTACGATGAGTTCGTGACAATGATGAGAAAAGGGAACCCAGAACCGAACCCAAAGAAGAGACGGGATGTATTTGTTTGA 1605 0.4611 MGNCCSQGNTNDGPANDKGETIPEPTTNPETAAPESSAAQNKPAASSTPAASSGASTKPSKPTPIGPVLGRPMEDVRTLYTIGKELGRGQFGVTHLCTSKATGEQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIISKGHYTERGAASLLRTIVQIVHTCHSMGVVHRDLKPENFLLLNKDENAPLKATDFGLSVFFKQGEVFRDIVGSAYYIAPEVLKRRYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHIDFTSDPWPTISSGAKDLVRKMLTSDPKQRITAFQVLNHPWIKEDGEAPDTPLDNAVFERFKQFRAMNKFKKVALRVIAGCLSEEEIMGLKQMFKGMDTDNSGTITLEELKQGLSKQGTKLSEYEVKQLMEAADADGNGTIDYDEFITATMHLNRMDKEDHLYTAFQYFDKDNSGYITTEELEQALHEFGMHDGRDIKEILNEVDGDNDGRINYDEFVTMMRKGNPEPNPKKRRDVFV* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1139 534 ProSitePatterns EF-hand calcium-binding domain. 501 513 IPR018247 -
Vvi6g1139 534 Pfam EF-hand domain pair 386 446 IPR002048 GO:0005509
Vvi6g1139 534 Pfam EF-hand domain pair 456 518 IPR002048 GO:0005509
Vvi6g1139 534 FunFam Calcium-dependent protein kinase 1 346 521 - -
Vvi6g1139 534 Gene3D - 356 517 - -
Vvi6g1139 534 ProSiteProfiles EF-hand calcium-binding domain profile. 492 523 IPR002048 GO:0005509
Vvi6g1139 534 Pfam Protein kinase domain 80 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1139 534 SUPERFAMILY Protein kinase-like (PK-like) 62 360 IPR011009 -
Vvi6g1139 534 FunFam Calcium-dependent protein kinase 1 82 165 - -
Vvi6g1139 534 Gene3D Phosphorylase Kinase; domain 1 81 165 - -
Vvi6g1139 534 ProSitePatterns Protein kinases ATP-binding region signature. 86 113 IPR017441 GO:0005524
Vvi6g1139 534 SMART efh_1 457 485 IPR002048 GO:0005509
Vvi6g1139 534 SMART efh_1 385 413 IPR002048 GO:0005509
Vvi6g1139 534 SMART efh_1 492 520 IPR002048 GO:0005509
Vvi6g1139 534 SMART efh_1 421 449 IPR002048 GO:0005509
Vvi6g1139 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 77 513 - -
Vvi6g1139 534 SMART serkin_6 80 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1139 534 ProSiteProfiles EF-hand calcium-binding domain profile. 381 416 IPR002048 GO:0005509
Vvi6g1139 534 ProSitePatterns EF-hand calcium-binding domain. 466 478 IPR018247 -
Vvi6g1139 534 ProSiteProfiles EF-hand calcium-binding domain profile. 453 488 IPR002048 GO:0005509
Vvi6g1139 534 CDD STKc_CAMK 80 337 - -
Vvi6g1139 534 MobiDBLite consensus disorder prediction 1 72 - -
Vvi6g1139 534 ProSitePatterns EF-hand calcium-binding domain. 394 406 IPR018247 -
Vvi6g1139 534 Gene3D Transferase(Phosphotransferase) domain 1 166 346 - -
Vvi6g1139 534 ProSiteProfiles EF-hand calcium-binding domain profile. 417 452 IPR002048 GO:0005509
Vvi6g1139 534 ProSiteProfiles Protein kinase domain profile. 80 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1139 534 Gene3D - 379 447 - -
Vvi6g1139 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vvi6g1139 534 ProSitePatterns EF-hand calcium-binding domain. 430 442 IPR018247 -
Vvi6g1139 534 MobiDBLite consensus disorder prediction 1 60 - -
Vvi6g1139 534 SUPERFAMILY EF-hand 378 518 IPR011992 -
Vvi6g1139 534 FunFam calcium-dependent protein kinase 1 166 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1139 Vvi-Chr6 16322877 16325979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1139 1 532 EF-hand Containing Proteins AT5G12180 80.524 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi6g1139 Pkinase 4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1139 K13412 - vvi:100251670 1052.35