Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1102 ATGGCGACCATCTCTCTTCGAAAAGGCAACACGCGGCTGCCGCCGGAGGTGAACCGAGTCCTCTACGTCCGCAACCTGCCATTCAACATCTCAAGTGAGGAGATGTACGACATCTTCGGCAAGTACGGTGCCATCCGCCAGATCCGAATCGGCACCAACAAGGACACTCGCGGCACCGCGTTCGTTGTCTACGAGGATATCTACGACGCCAAGACCGCCGTCGATCATCTCTCTGGCTTCAACGTCGCCAATCGGTACCTCATCGTTCTCTACTATCAGCAGGCCAAGATGAGCAAGAAGTTCGATCAGAAGAAGAAGGAGGACGAGCTCGCCAAGATGCAGGAGAAGTACGGCGTCTCGCTTAACAAAGATAAGTAG 378 0.545 MATISLRKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELAKMQEKYGVSLNKDK* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1102 125 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Vvi6g1102 125 Gene3D - 15 120 IPR012677 -
Vvi6g1102 125 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 21 109 - -
Vvi6g1102 125 SUPERFAMILY RNA-binding domain, RBD 7 102 IPR035979 GO:0003676
Vvi6g1102 125 CDD RRM_SF3B14 17 93 IPR034150 -
Vvi6g1102 125 FunFam splicing factor 3B subunit 6-like protein 15 118 - -
Vvi6g1102 125 SMART rrm1_1 20 90 IPR000504 GO:0003723
Vvi6g1102 125 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1102 Vvi-Chr6 15591348 15591725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1102 21 107 Eukaryotic Initiation Factors Gene Family AT1G49760 32.632 3.84e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1102 K12833 - vvi:100258249 251.136