Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1098 ATGGCTTTCACAGTGGACAAGTGTGAAGAAATGGTGTTCTCTGTGGAATCACAAAAGGCAGTTCCAGCACCATTCCTCACAAAGACATACCAGCTAGTTGATGATCCTCACACAGACCACATCGTGTCCTGGGGTGAAGATGAAACCACCTTTGTTGTTTGGAGACCCCCTGAGTTTGCCAGGGATCTCCTCCCCAACTACTTCAAGCACAACAACTTCTCCAGCTTTGTTAGGCAGCTCAATACCTATGGTTTCAAGAAGATAGTTGCAGATAGATGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGGGAAGCACATGTTGTCTGAAATCCACAGAAGAAAAACCCCTCATCACCATCACCAACCCTACCATGACCATCACCAACCACCCCAATTTCTCCAACCAGAGCTTGAAAACAGTGTCTGGATTGATTCCCCATTACCATCCCCCACAGCAAGTTCTGATGTTCTAACAGCTCTCACCCAAGATAACCACCGTCTGAGGAGAAAAAACTTCATGCTTTTATCCGAACTAGCTCACATGAAGACTCTATACAATGACATTATCTTCTTCATCCAAAACCATGTAAAACCAGTAGCACCCTATGACCAAAGACCCAAATCAAATGCAGCTCCTAAGCTCATAGAATTGGATTCCTCACTTCAGTCTCCAAATGTTTCAGGCATGCAAACCCCGAAACATCGCTATTCGGCCGGTAACTGCTCCATGAGTACTTTAACTGATGATCAGCAAACCAACAATGGCTCCTTCAAGCTCTTTGGGGTTCCACTAAGTGGCAAGAAGAGATTGCACCCGGAAAAGTTTGATCCTGAAGAACTGCAATGTCCTTACTGA 858 0.4499 MAFTVDKCEEMVFSVESQKAVPAPFLTKTYQLVDDPHTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKIVADRWEFANEYFRKGGKHMLSEIHRRKTPHHHHQPYHDHHQPPQFLQPELENSVWIDSPLPSPTASSDVLTALTQDNHRLRRKNFMLLSELAHMKTLYNDIIFFIQNHVKPVAPYDQRPKSNAAPKLIELDSSLQSPNVSGMQTPKHRYSAGNCSMSTLTDDQQTNNGSFKLFGVPLSGKKRLHPEKFDPEELQCPY* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1098 285 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi6g1098 285 FunFam Heat stress transcription factor B-4 17 115 - -
Vvi6g1098 285 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi6g1098 285 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi6g1098 285 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi6g1098 285 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi6g1098 285 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Vvi6g1098 285 Gene3D - 17 116 IPR036388 -
Vvi6g1098 285 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 230 IPR027725 -
Vvi6g1098 285 MobiDBLite consensus disorder prediction 222 249 - -
Vvi6g1098 285 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1098 Vvi-Chr6 15556361 15557649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1098 9 272 HSF AT1G46264 51.634 4.81e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vvi6g1098 HSF_DNA-bind 8.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1098 K09419 - vvi:100249553 589.341