Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1088 ATGGCTTTTATAGCTCTTGTACTCCTGTCCCTCCTTACTCCTCTCGTCTCTGTTTACTCCTTCGATGATGTAAAATCATGGTGCAGCCAGACACCCAACCCTCAACCTTGTGACTACTTTTTGAGCCAAAAGACTGATCAATCCCTCATCAAACAAAAGTCCGATTTTCTCAACTTATCAATGCAACTTGCTTTAGAACGTGCCATAATTGCTCATGGTAACACCCTTTCCCTAGGCTCCAAGTGTCGGAATGAGCGAGAAAAGGCTGCGTGGAATGATTGTCTTGAGCTCTACGAGCACACCATTCTTAAGCTCAATAAAACTCTTGATCCCAACACTAGGTGCACCCAAGTTGACGCTCAAACATGGCTCAGCACTGCTCTTACCAACCTCCAAACATGCCAAGACGGGTTCATCGAGCTTGGTGTGTCAGACTACCTTTTGCCCTCAATGTCCAACAATGTTTCCAAGTTGATTAGTAACACTCTATCCATCAACAAAGTTCCATATGCCGAGCCTAGTTACAAAGGGGGTTACCCAACTTGGGTGAAACCTGGTGACCGAAAGCTTTTGCAGTCTTCTTCACTGGCTTCGCAGGCGAATATTGTGGTGTCAAAAGATGGCTCAGGGGATTACACGACAATCGGAGCAGCAATCACTGCAGCATCCAAGCGATCAGGAAGTGGAAGGTATGTGATATATGTGAAGGCAGGTACATATAGTGAGAATGTTCAAATTGGAAGCGGTTTGAAGAATATAATGTTGCTGGGTGATGGAATTGGAAAGACCATAGTGACCGGAAGTAAGAGTGTGGGGGGAGGCTCTACTACATTCAAGTCAGCTACAGTTGCTGTGGTTGGAGATGGCTTCATAGCTCGTGGCATGACATTCCGTAACACCGCTGGAGCATCCAACCACCAGGCAGTGGCTCTACGATCCGGGTCTGACCTCTCAGTGTATTACCAATGTAGCTTTGAAGGGTACCAAGATACTCTCTACACTTACTCTGAGCGACAATTCTATAGAGAATGCGATATATATGGGACTGTGGATTTCATATTTGGAAATGCTGCAGTTGTGTTTCAAAATTGCAACATTTATGCCCGTAACCCTCCCAACAAGATCAACACAGTAACTGCCCAAGGCAGGACTGACCCTAACCAAAACACTGGAATTTCCATACACGACTGTAAGGTTACGGCTGCTTCCGATCTAAAGCCAGTCCAAAGCTCGGTCAAGACATACCTTGGAAGGCCATGGAAAGAATATTCTCGGACCGTCTTCCTAAAGACATACCTTGATAGCCTAATAAACTCGGCTGGTTGGTTGGAATGGAGCGGTGACTTTGCCCTAAACACACTGTATTATGGAGAGTACATGAATACAGGCCCCGGGTCATCCACATCTGGTAGGGTAAAATGGGCTGGTTATCATGTGATTACTAGCTCAACTGAAGCAGCAAAGTTCACGGCTGGTAACTTCATCTCCGGCAATTCCTGGTTACCATCTACCAACGTTCCTTTCACTTCTGGCCTTTGA 1539 0.46 MAFIALVLLSLLTPLVSVYSFDDVKSWCSQTPNPQPCDYFLSQKTDQSLIKQKSDFLNLSMQLALERAIIAHGNTLSLGSKCRNEREKAAWNDCLELYEHTILKLNKTLDPNTRCTQVDAQTWLSTALTNLQTCQDGFIELGVSDYLLPSMSNNVSKLISNTLSINKVPYAEPSYKGGYPTWVKPGDRKLLQSSSLASQANIVVSKDGSGDYTTIGAAITAASKRSGSGRYVIYVKAGTYSENVQIGSGLKNIMLLGDGIGKTIVTGSKSVGGGSTTFKSATVAVVGDGFIARGMTFRNTAGASNHQAVALRSGSDLSVYYQCSFEGYQDTLYTYSERQFYRECDIYGTVDFIFGNAAVVFQNCNIYARNPPNKINTVTAQGRTDPNQNTGISIHDCKVTAASDLKPVQSSVKTYLGRPWKEYSRTVFLKTYLDSLINSAGWLEWSGDFALNTLYYGEYMNTGPGSSTSGRVKWAGYHVITSSTEAAKFTAGNFISGNSWLPSTNVPFTSGL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1088 512 FunFam Pectinesterase 195 512 - -
Vvi6g1088 512 SUPERFAMILY Pectin lyase-like 195 511 IPR011050 -
Vvi6g1088 512 Pfam Pectinesterase 201 498 IPR000070 GO:0030599|GO:0042545
Vvi6g1088 512 Gene3D Invertase/pectin methylesterase inhibitor family protein 20 168 IPR035513 -
Vvi6g1088 512 Pfam Plant invertase/pectin methylesterase inhibitor 23 165 IPR006501 GO:0004857
Vvi6g1088 512 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 22 168 IPR035513 -
Vvi6g1088 512 PANTHER PECTINESTERASE 11 504 - -
Vvi6g1088 512 ProSitePatterns Pectinesterase signature 2. 346 355 IPR033131 -
Vvi6g1088 512 Gene3D - 196 512 IPR012334 -
Vvi6g1088 512 FunFam Pectinesterase 19 168 - -
Vvi6g1088 512 NCBIfam pectinesterase inhibitor domain 5 168 IPR006501 GO:0004857
Vvi6g1088 512 SMART PMEI_2 19 165 IPR006501 GO:0004857
Vvi6g1088 512 CDD PMEI-like_3 26 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1088 Vvi-Chr6 15391475 15393173 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1088 1 512 Carbohydrate Esterase AT2G45220 66.602 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1088 K01051 - vvi:100263290 1016.14