Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1086 ATGTCCAACAATGTTTCCAAGTTGATTAGTAACACTCTATCCATCAACAAAGTTCCATATGCCGAGCCTAGTTACAAAGGGGGTTACCCAACTTGGGTGAAACCTGGTGACCGAAAGCTTTTGCAGTCTTCTTCACTGGCTTCGCAGGCGAATATTGTGGTGTCAAAAGATGGCTCAGGGGATTACACGACAATCGGAGCAGCAATCACTGCAGCATCCAAGCGATCAGGAAGTGGAAGGCATGTGATATATGTGAAGGCAGGGACATATAGTGAGAATGTTCAAATTGGAAGCGGTTTGAAGAATATAATGTTGGTGGGTGATGGAATTGGAAAGACCATAGTTACCGGAAGTAAGAGTGTGGGGGGAGGCTCTACTACATTCAAGTCAGCTACAGTTGCTGTGGTTGGAGATGGCTTCATAGCTCGTGGCATGACATTCCGTAACACCGCTGGAGCATCCAACCACCAGTCAGTGGCTCTACGATCCGGGTCTGACCTCTCAGTGTATTACCAATGTAGCTTTGAAGGGTACCAAGATACTCTCTACACTTACTCTGAGCGACAGTTCTATAGAGGATGCGATATATATGGGACTGTGGATTTCATATTTGGGAATGCTGCAGTTGTGTTTCAAAATTGCAACATTTATGCTCGTAACCCTCCCAACAAGATCAACACAGTAACTGCCCAAGGCAGGACTGACCCTAACCAAAACACTGGAATTTCCATACACGACTGTAAGGTTACCGCTGCTTCCGATCTAAAGCCAGTCCAAGGCTCGGTCAAGACATACCTTGGAAGGCCATGGAAAGAATATTCTCGGACCGTCTTCCTAAAGACCTACCTTGATAGCCTAATAAACTCGGCAGGTTGGTTGGAATGGAGTGGTAACTTTGCCCTAAACACACTGTATTATGGAGAGTACATGAATACAGGCGACGGGTCATCCACATCTGGTAGGGTAAAATGGGCTGGCTATCATGTGATTACTAGCTCAACCGAAGCAGCAAAGTTCACGGTTGGTAACTTCATCTCCGGCAATTCCTGGTTACCATCTACCAACGTTCCTTTCACTTCTGGCCTTTGA 1089 0.4619 MSNNVSKLISNTLSINKVPYAEPSYKGGYPTWVKPGDRKLLQSSSLASQANIVVSKDGSGDYTTIGAAITAASKRSGSGRHVIYVKAGTYSENVQIGSGLKNIMLVGDGIGKTIVTGSKSVGGGSTTFKSATVAVVGDGFIARGMTFRNTAGASNHQSVALRSGSDLSVYYQCSFEGYQDTLYTYSERQFYRGCDIYGTVDFIFGNAAVVFQNCNIYARNPPNKINTVTAQGRTDPNQNTGISIHDCKVTAASDLKPVQGSVKTYLGRPWKEYSRTVFLKTYLDSLINSAGWLEWSGNFALNTLYYGEYMNTGDGSSTSGRVKWAGYHVITSSTEAAKFTVGNFISGNSWLPSTNVPFTSGL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1086 362 Gene3D - 46 362 IPR012334 -
Vvi6g1086 362 FunFam Pectinesterase 45 362 - -
Vvi6g1086 362 SUPERFAMILY Pectin lyase-like 45 361 IPR011050 -
Vvi6g1086 362 Pfam Pectinesterase 51 348 IPR000070 GO:0030599|GO:0042545
Vvi6g1086 362 ProSitePatterns Pectinesterase signature 2. 196 205 IPR033131 -
Vvi6g1086 362 PANTHER PECTINESTERASE 2 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1086 Vvi-Chr6 15367758 15369006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1086 1 362 Carbohydrate Esterase AT2G45220 71.901 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1086 K01051 - vvi:100258155 722.62