Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1085 ATGGTTTTTGTAGCTCTTGTACTCGTGTCCCTCCTCCTTACTCCTCTGGTCTCTGGTTACTCCTCCCATGATGTAAAATCATGGTGCAGCCAGACACCCTACCCTCAACCTTGTGAGTACTTTCTGAGCCATAAGCCTGATCACTCCCCCATTAAACAGAAGTCCGATTTTCTCAATATATCAATGCAAGTTGCTTTGGAACAAGCCATGACTGCTCATGGTAACATATTTTCGCTAGGTTCCAAGTGCCGGAATGAGCGAGAAAAGGCTGCATGGAATGATTGTGTCGAGCTCTATGACCACACCATTCTTAAGCTCAACAAAACTCTCGATCCCAACACTAGGTGTACCCAAGTTGACGCTCAAACATGGCTCAGCACTGCTCTTACCAACCTCCAAACATGCCAAGACGGGTTCATCGAGCTCGGTGTGTCAGACCACTTTTTGCCCTTAATATCCAACAATGTTTCTAAGTTGATTAGCAACACTCTATCCATCAACAAAGTTCCATATGCTGAGCCTAGTTACAAAGGGGGTTACCCAACTTGGGTGAAACCCGGTGACCGAAAGCTTTTGCAGTCTTCTTCTCTGGCTTCGCAGGCTAATATTGTGGTGTCAAAAGATGGCTCAGGGGATTACACGACAATCGGAGCAGCAATCACTGCAGCATCCAAGCGATCAGGAAGTGGAAGGTATGTGATATATGTGAAGGCAGGGACATACAGTGAGAATGTTCAGATTGGAAGCGGTCTGAAGAATATAACGCTGTTGGGTGATGGGATTGGAAAGACCATTGTTACTGGAAGTAGGAGTGTGGGGGGAGGATCTACTACTTACAATTCAGCTACTGTTGCTGTGGTTGGAGATGGCTTCATAGCTCGCGGCATGACAATCCGTAACACTGCTGGAGCGTCCAACCACCAGGCAGTGGCTCTACGATCCGGGTCCGACCTCTCAGTGTATTACCAATGTAGCTTCGAAGGCTACCAGGACACACTCTACGTCTACTCTGACAGACAATTCTATAGAGAATGCGATATCTATGGGACTGTGGATTTCATTTTTGGAAATGCTGCAGTTGTGTTTCAAAAGTGCAATATTTATGCACGTAACCCTCCCAACAAGGTCAACACAGTAACTGCCCAAGGTAGGACTGACCCTAACCAAAACACTGGAATTTCCATACACGACTGTGAGGTTACAGCTGCTTCAGATCTAAAGGCTGTCCAAAGCTCGGTCAAGACATACCTTGGAAGGCCATGGAAAGAATATTCTCGGACCGTCTTCCTAAAGACCTACCTTGATAGCCTAATAAACTCGGCTGGTTGGTTGGAATGGAGCGGTGACTTTGCCCTAAACACACTGTATTATGGAGAGTACATGAATACTGGCCCCGGGTCATCCACATCTGGTAGGGTAAATTGGACTGGCTATCATGTGATTACTAGCTCAACTGAAGCAGCAAAGTTCACTGTTGGTAACTTCATCTCCGGCAATTCCTGGTTACCATCTACCAACGTTCCTTTCACTTCTGGCCTTTGA 1542 0.4656 MVFVALVLVSLLLTPLVSGYSSHDVKSWCSQTPYPQPCEYFLSHKPDHSPIKQKSDFLNISMQVALEQAMTAHGNIFSLGSKCRNEREKAAWNDCVELYDHTILKLNKTLDPNTRCTQVDAQTWLSTALTNLQTCQDGFIELGVSDHFLPLISNNVSKLISNTLSINKVPYAEPSYKGGYPTWVKPGDRKLLQSSSLASQANIVVSKDGSGDYTTIGAAITAASKRSGSGRYVIYVKAGTYSENVQIGSGLKNITLLGDGIGKTIVTGSRSVGGGSTTYNSATVAVVGDGFIARGMTIRNTAGASNHQAVALRSGSDLSVYYQCSFEGYQDTLYVYSDRQFYRECDIYGTVDFIFGNAAVVFQKCNIYARNPPNKVNTVTAQGRTDPNQNTGISIHDCEVTAASDLKAVQSSVKTYLGRPWKEYSRTVFLKTYLDSLINSAGWLEWSGDFALNTLYYGEYMNTGPGSSTSGRVNWTGYHVITSSTEAAKFTVGNFISGNSWLPSTNVPFTSGL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1085 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 20 169 IPR035513 -
Vvi6g1085 513 SMART PMEI_2 20 166 IPR006501 GO:0004857
Vvi6g1085 513 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Vvi6g1085 513 Gene3D - 197 513 IPR012334 -
Vvi6g1085 513 SUPERFAMILY Pectin lyase-like 196 512 IPR011050 -
Vvi6g1085 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 23 169 IPR035513 -
Vvi6g1085 513 FunFam Pectinesterase 20 169 - -
Vvi6g1085 513 Pfam Pectinesterase 202 499 IPR000070 GO:0030599|GO:0042545
Vvi6g1085 513 CDD PMEI-like_3 27 168 - -
Vvi6g1085 513 Pfam Plant invertase/pectin methylesterase inhibitor 25 166 IPR006501 GO:0004857
Vvi6g1085 513 PANTHER PECTINESTERASE 9 505 - -
Vvi6g1085 513 FunFam Pectinesterase 196 513 - -
Vvi6g1085 513 NCBIfam pectinesterase inhibitor domain 2 169 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1085 Vvi-Chr6 15354104 15355804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1085 4 513 Carbohydrate Esterase AT2G45220 66.732 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1085 K01051 - vvi:100259777 1018.45