Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1084 ATGGCTTTTGTAGCTCTTATACTCGTGTCCCTCCTTCTTACTCCTTTCGTTTCTGTTCACTTCTCCGATGATGTAAAATCATGGTGCAGCCAGACACCCCACCCTCAACCTTGTGAATACTTTCTGAGCCATAAGCCTGATCACTCACCCATCAAACAGAAGTCTGATTTTCTCAACATATCAATGCAACTTGCTTTGGAACATGCCATGATTGCTCATGGTGACACCTTTTCCCTAGGCTCCAAGTGTCGGAATGAGCGAGAAAAGGCTGCATGGAATGATTGTCTCGAGCTCTATGACCACACCATTCTTAAGCTCAACAAAACTCTTGATCCCAACACTAGGTGCACCCAAGCTGATGCTCAAACATGGCTCAACACTGCTCTTACCAACCTCCAAACATGCCAAGACGGGTTCATCGACCTTGGTGTGTCAGGTCACTTTTTGCCCTTAATGTCCAACAATGTTTCCAAGTTGATTAGCAACACTCTATCCATCAACAAAGTTCCATATTCTGTGCCTACTTACAAAGGGGGTTACCCAACTTGGGTGAAGCCTGGCGACCGAAAGCTTTTGCAGTCTTCTTCTCTAGCTTCGCAGGCAAATATTGTGGTGTCCAAAAATGGTACACATGATTACACAACAATAGGAGCAGCAATCACTGCAGCATCCAAGCGATCAGGAAGTGGAAGGTATGTGATATATGTGAAGGCAGGGACATATAGTGAGAATGTTCAAATTGGAAGTGGTTTGAAGAATATAATGTTGCTGGGTGATGGGATTGGAAAGACCATAGTCACTGGAAGTAAGAGTGTGGGAGGAGGCTCTATTACATACAATTCAGCTACAGTTGGTTAG 858 0.4452 MAFVALILVSLLLTPFVSVHFSDDVKSWCSQTPHPQPCEYFLSHKPDHSPIKQKSDFLNISMQLALEHAMIAHGDTFSLGSKCRNEREKAAWNDCLELYDHTILKLNKTLDPNTRCTQADAQTWLNTALTNLQTCQDGFIDLGVSGHFLPLMSNNVSKLISNTLSINKVPYSVPTYKGGYPTWVKPGDRKLLQSSSLASQANIVVSKNGTHDYTTIGAAITAASKRSGSGRYVIYVKAGTYSENVQIGSGLKNIMLLGDGIGKTIVTGSKSVGGGSITYNSATVG* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1084 285 FunFam Pectinesterase 20 169 - -
Vvi6g1084 285 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 169 IPR035513 -
Vvi6g1084 285 NCBIfam pectinesterase inhibitor domain 1 169 IPR006501 GO:0004857
Vvi6g1084 285 CDD PMEI-like_3 27 168 - -
Vvi6g1084 285 SUPERFAMILY Pectin lyase-like 196 284 IPR011050 -
Vvi6g1084 285 SMART PMEI_2 20 166 IPR006501 GO:0004857
Vvi6g1084 285 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 22 170 IPR035513 -
Vvi6g1084 285 Pfam Plant invertase/pectin methylesterase inhibitor 24 166 IPR006501 GO:0004857
Vvi6g1084 285 Gene3D - 196 285 IPR012334 -
Vvi6g1084 285 PANTHER PECTINESTERASE 12 284 - -
Vvi6g1084 285 Pfam Pectinesterase 202 284 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1084 Vvi-Chr6 15341435 15342292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1084 1 285 Carbohydrate Esterase AT2G45220 58.621 1.46e-118 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1084 K01051 - vvi:100259777 517.309