Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1078 ATGGCTGCGTCCAAGTCGGATATTAGGAAGTGGTTTATGAAAAAACATGACAACGACAATGGCAATCCGTTGAAGCCTGCAAAACCTGAGCCTAAAGCTTCACAATCAGGGAAACCTTCTCCAGCTACTGTGCAGCAGGAGAAACCTGTGCATGGAGGCCAAGAAAGTTCTTGCAGAAGGAAGACTAGCAAGTATTTTCAAAAGCCTAAAGATGAGAAGGAAATGGAAGAACTCCCAGCTAAAAGAAAGACCCAGAAGGGTACTAAGGAATCATTGAACCCCCCACCTTCCAAAAAAATTCGCCGAGTTGTCGATGATGATGATGATGACTTTGTCTTGCATAAAAGTGATGATGAGAAAGTTGATAAAGATACAGAACCTCCTATTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGTGCATTGGTAACACCAGCTGGTGGAAGAGGCAGAGGTGGTGGACGCGGTGGATTTATGAATTTTGGAGAAAGGAAGGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCTGATTGTTTGGCTGGTTTGACATTTGTAATTAGTGGAACCCTTGACAGTTTGGAAAGGGAAGAAGCAGAGGATCTGATCAAGCGCCATGGTGGTCGTGTTACTGGATCTGTTAGCAAAAAAACAAATTTTCTTTTATGTGATGAAGATATTGGGGGCAATAAGTCTGCTAAGGCCAAAGAGCTGGGCACTGCCTTTCTTACCGAGGATGGACTGTTTGATATGATCTGTGCATCAAATCATGCAAAAGCACCTGCACGAGGGGAACCAAAAAAGTCTTTGGATAAGGTTGTGTTGGCAACACCAAAGAAAAGTCCTCAGAAAGTGGAAAAGAAAGTGGATCAAGTGGTCAACTCTTCAGGAAAACGCACAGTTTTGGCAGCTACCACTCCTAAGCATATATATCAAACTATTGGACATGCTTCATTGACATGGACTGAAAAATATAAGCCAAAGGTTCCAAATGACATCATTGGGAATCAGTCACTGGTTAAACAGCTTCATGAATGGTTGGCACATTGGAATGAGCAATTTCTTCATACTGGCACTAAGGGAAAAGGGAAAAAACAGAATGATTCTGGTGCTAAAAAAGCTGTACTGTTAAGTGGAACACCTGGTATAGGAAAGACTACATCAGCAAAGTTGGTTAGTCAGATGCTGGGTTTCCAGGCAATTGAGGTAAATGCCAGTGATAATCGTGGAAAGGCTAATGCCAAAATTGATAAAGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAACTCGTCAGTAATGAAGCTTTGGGTGCTCACATGGATAGGTCAAAGCATCCAAAGACTGTGCTGATTATGGATGAGGTTGATGGGATGTCTGCTGGAGATAGAGGGGGAGTGGCTGATCTTATTGCTAGCATCAAGATTTCCAAAATTCCCATCATCTGCATCTGTAATGATCGCTACAGTCAGAAACTAAAAAGTCTAGTGAACTACTGTTTGCTTCTCAGCTTCCGAAAACCTACAAAACAACAGATGGCAAAGAGGTTATTGCAAGTTGCAAATGCAGAAGGCCTTCAAGTCAATGAGATTGCCCTTGAGGAACTTGCAGAAAGAGTTAATGGAGATATGCGCATGGCACTAAACCAGTTGCAGTACATGAGCCTCTCCATGTCAGTCATTAAATATGATGATGTAAGGCAGCGGCTTCTGAGCAGTGCAAAAGATGAAGATATTTCACCATTTGTGGCTGTTGATAAGCTGTTTGGTTTTAATGGGGGAAAGCTGAGAATGGATGAGCGGATTGACCTCAGCATGAGTGACCCTGATCTAGTTCCACTTCTTATTCAGGAAAACTATATCAATTATAGGCCAACTTTGGCTGGTAAGGATGACAATGGGGTGAAACGGATGAGCTTGCTTGCTCGTGCTGCTGAGTCTATTGGTGATGGGGATATAATTAATGTACAGATTCGAAGATATCGACAGTGGCAACTCTCTCAAGCTGGCTCCTTTGCATCCTGTATAACTCCTGCTGCACTCTTGCATGGGCAAAGGGAGACACTTGAACAGGGAGAACGCAATTTTAATAGATTTGGTGGCTGGCTGGGAAAAAACTCAACAATGGGAAAAAATAAGAGACTCTTGGAGGATCTGCATGTTCATCTTCTTGCTTCTCGTGAATCTAATTCTGGAAGGGGAACCTTGCGAATTGATTACCTTACTCTAATTCTGAAACGGTTGACTGATCCACTACGCATGCTGCCTAAGGATGACGCTGTTCAGAAAGTTGTGGAGTTCATGGATTTATACTCTATAAGTCAGGAGGACTTTGATACTATTGTGGAGTTATCTAAATTTCAGGGGCACCCAAGTCCACTGGAGGGCATACAGCCAGCTGTCAAGTCAGCTTTAACAAAGGCTTACAATAAAGGAAGTAGCTCTCGCTTGGTGCGTGCAGCTGATTTAATCACACTTCCTGGAATCAAAAAGGCCCCCAAGAAGCGAATTGCTGCAATTCTAGAGCCAGTAGATGATGAATTGGCAAGAGAGAACGGTGATGCATTGGCGGAAAGTGAAGAAGAAAACTCTTCAGACACAGATGACATGGACACTGCTAATGGTGATAAGAAGCTGCCAGTGGATCTCCAGAATCTCAACTCTAAAGGAATTAAAGTAGAACTAGACTTAAAAGGTGCTGGGAGTTCTAGTGCCAAGAAAACACCAGCAGGCAGAGGAAGAGGAGGAGGTTCTGCATCCACAGAGAAGAAAGGGGGCAGAGGCTCAGGGGCTGCTGGTGCCAAGAGAAAGAGGTAG 2826 0.436 MAASKSDIRKWFMKKHDNDNGNPLKPAKPEPKASQSGKPSPATVQQEKPVHGGQESSCRRKTSKYFQKPKDEKEMEELPAKRKTQKGTKESLNPPPSKKIRRVVDDDDDDFVLHKSDDEKVDKDTEPPIKSGGRGRGGRGALVTPAGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNFLLCDEDIGGNKSAKAKELGTAFLTEDGLFDMICASNHAKAPARGEPKKSLDKVVLATPKKSPQKVEKKVDQVVNSSGKRTVLAATTPKHIYQTIGHASLTWTEKYKPKVPNDIIGNQSLVKQLHEWLAHWNEQFLHTGTKGKGKKQNDSGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQAIEVNASDNRGKANAKIDKGIGGSNANSIKELVSNEALGAHMDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLLQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFVAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPTLAGKDDNGVKRMSLLARAAESIGDGDIINVQIRRYRQWQLSQAGSFASCITPAALLHGQRETLEQGERNFNRFGGWLGKNSTMGKNKRLLEDLHVHLLASRESNSGRGTLRIDYLTLILKRLTDPLRMLPKDDAVQKVVEFMDLYSISQEDFDTIVELSKFQGHPSPLEGIQPAVKSALTKAYNKGSSSRLVRAADLITLPGIKKAPKKRIAAILEPVDDELARENGDALAESEEENSSDTDDMDTANGDKKLPVDLQNLNSKGIKVELDLKGAGSSSAKKTPAGRGRGGGSASTEKKGGRGSGAAGAKRKR* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1078 941 CDD BRCT_RFC1 178 255 - -
Vvi6g1078 941 MobiDBLite consensus disorder prediction 1 177 - -
Vvi6g1078 941 SUPERFAMILY post-AAA+ oligomerization domain-like 582 727 IPR008921 GO:0003677|GO:0006260
Vvi6g1078 941 FunFam Replication factor C subunit 1 583 692 - -
Vvi6g1078 941 SUPERFAMILY BRCT domain 178 257 IPR036420 -
Vvi6g1078 941 PIRSF RFC1 3 134 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Vvi6g1078 941 PIRSF RFC1 142 913 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Vvi6g1078 941 CDD HLD_clamp_RFC 511 569 - -
Vvi6g1078 941 MobiDBLite consensus disorder prediction 8 23 - -
Vvi6g1078 941 FunFam Replication factor C subunit 1 322 510 - -
Vvi6g1078 941 MobiDBLite consensus disorder prediction 53 88 - -
Vvi6g1078 941 MobiDBLite consensus disorder prediction 162 177 - -
Vvi6g1078 941 Pfam BRCA1 C Terminus (BRCT) domain 180 255 IPR001357 -
Vvi6g1078 941 MobiDBLite consensus disorder prediction 36 52 - -
Vvi6g1078 941 SMART BRCT_7 180 258 IPR001357 -
Vvi6g1078 941 FunFam Replication factor C subunit 1 511 582 - -
Vvi6g1078 941 SMART AAA_5 374 512 IPR003593 GO:0016887
Vvi6g1078 941 Gene3D - 583 693 - -
Vvi6g1078 941 MobiDBLite consensus disorder prediction 95 130 - -
Vvi6g1078 941 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 25 917 - -
Vvi6g1078 941 Pfam ATPase family associated with various cellular activities (AAA) 378 477 IPR003959 GO:0005524|GO:0016887
Vvi6g1078 941 Pfam Replication factor RFC1 C terminal domain 651 814 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Vvi6g1078 941 Gene3D BRCT domain 155 256 IPR036420 -
Vvi6g1078 941 CDD AAA 371 474 - -
Vvi6g1078 941 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 571 IPR027417 -
Vvi6g1078 941 Gene3D - 511 581 - -
Vvi6g1078 941 ProSiteProfiles BRCT domain profile. 178 255 IPR001357 -
Vvi6g1078 941 Gene3D - 322 510 IPR027417 -
Vvi6g1078 941 FunFam Replication factor C subunit 1 154 257 - -
Vvi6g1078 941 MobiDBLite consensus disorder prediction 854 941 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1078 6 893 Core DNA Replication Machinery Family AT5G22010 66.272 0.0 1102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1078 K10754 - vvi:100249625 1741.86