Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1073 ATGGCCGGTGATCAAGAAGGTTCTCCATTGGGTGAGGAAGAAGTTGGAAGTGGAGGAAAATCAGGCGGAGGGGGAGGGGGTCCTCTGAAGAAAGGACCATGGACCTCAGCAGAGGATGCAGTTTTGATAGATTATGTCACCAAGCATGGAGAGGGGAATTGGAATGCAGTGATGAAGCACTCTGGACTCTCCAGATGTGGGAAAAGCTGCCGCCTCCGCTGGGCAAATCATCTGAGGCCGGATTTGAAGAAGGGTGCTTTCACTCCCGAGGAGGAGCACCGCATAATCGAACTCCATGCCAGAATGGGAAACAAATGGGCACGGATGGCTGCTGAGTTGCCTGGGCGTACAGATAATGAAATAAAAAATTACTGGAATACCCGGATCAAGAGACTGCAGCGTGCTGGCTTACCGATTTACCCTCCGGATGTTAGTATGAAAGCGCTGAATGGGAGTCAGCAAAGCCAAAGCATGGGTTCATTAACCACTGGTGAGGCAAGCCCATCTGATCTGTTGCAGGGAAACAGTTTTGAGATTCCTGCTGTGCAATTCAAAAATTTGCAAAATCCAGGGATCTATCCTTATCCACCGACATATTTTGATATTCTTCCGAGTGGGTCGCTAACGCAAAATCTTGGTTCATCTGATGGTCAGAACTTTATGTTTCCAGCAATGCATCCCCCCAAACGCTTTCGAGAATCAGAGACCTTTTTCTCTGGATTGAATGATGATTTCAGCAATGCTTTCCCAGCATTAGATCTGTATGATGATACATGTGACAACAATCCTTATTATCTGTATGATGATACATGTGAGAAGAATCCTCAGCCATTTGAGTGGTCTTCTTCATATGATCCTGATCTAAGCACTAACCTGACATCCTTAGGTGGACTTCCTGGCAGCCATGCCCTTTCAAATGGCAATTTCTCTTCCGAGCCCATCTCTGGGGCTATGAAGGTGGAGCTCCCTTCTCTCCAATATTCAGAGGCTCAAGTTGGCAACTGGGGCTCACTTTTCCCAATGCCTTCAATTGAGTCTGTTGATACTCTGATTCAGTCCCCTCAAACTGAGCAAATTCAGGTAGATTGTCTTTCACCATCCAAAAGTGGCCTATTGGAAGCAGTAGTTTATGAATCGCGGAATCTGAAAAGGAAGTATGATTCATGCCACCAGGCTTCAAATACTGCTATTGAGTGCAATGATGTAGTGGGCAATTTGCCTCTTAATCCCTATGAAGCAGAATGGAATGTATATGTTGACCCAACATCTCCTTTAGGTAATTCTGCTGCATCTGTATTTAATGTGCATACTCCTATCAGCGGAAGCTCGCCAGATGAGCCCCAGTCGATTGAGACCTTGCTAGGGTGCAAAGTTCATCCAGAACCAGTTAATCAGATTGCTACTCACTATGATGGAAAGAAAGAAACCCCAAACCAGATGGACTTATCCAGGCCTGATCGTTTGCTTGATGCGGATTGGTTTGGACCGGATACTGAGCGTGGCAGGGAACAAGCTACCTGGAGAGATGCTCTAAATGCCCTTCTTGGTGAAGATATCAACAGCAACAAGAAGTAA 1575 0.4616 MAGDQEGSPLGEEEVGSGGKSGGGGGGPLKKGPWTSAEDAVLIDYVTKHGEGNWNAVMKHSGLSRCGKSCRLRWANHLRPDLKKGAFTPEEEHRIIELHARMGNKWARMAAELPGRTDNEIKNYWNTRIKRLQRAGLPIYPPDVSMKALNGSQQSQSMGSLTTGEASPSDLLQGNSFEIPAVQFKNLQNPGIYPYPPTYFDILPSGSLTQNLGSSDGQNFMFPAMHPPKRFRESETFFSGLNDDFSNAFPALDLYDDTCDNNPYYLYDDTCEKNPQPFEWSSSYDPDLSTNLTSLGGLPGSHALSNGNFSSEPISGAMKVELPSLQYSEAQVGNWGSLFPMPSIESVDTLIQSPQTEQIQVDCLSPSKSGLLEAVVYESRNLKRKYDSCHQASNTAIECNDVVGNLPLNPYEAEWNVYVDPTSPLGNSAASVFNVHTPISGSSPDEPQSIETLLGCKVHPEPVNQIATHYDGKKETPNQMDLSRPDRLLDADWFGPDTERGREQATWRDALNALLGEDINSNKK* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1073 524 SMART sant 30 80 IPR001005 -
Vvi6g1073 524 SMART sant 83 131 IPR001005 -
Vvi6g1073 524 FunFam MYB-related transcription factor 30 83 - -
Vvi6g1073 524 SUPERFAMILY Homeodomain-like 29 125 IPR009057 -
Vvi6g1073 524 CDD SANT 34 78 IPR001005 -
Vvi6g1073 524 Gene3D - 30 83 - -
Vvi6g1073 524 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Vvi6g1073 524 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Vvi6g1073 524 Pfam Myb-like DNA-binding domain 84 127 IPR001005 -
Vvi6g1073 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 78 IPR017930 -
Vvi6g1073 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Vvi6g1073 524 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 18 507 - -
Vvi6g1073 524 MobiDBLite consensus disorder prediction 1 33 - -
Vvi6g1073 524 FunFam Transcription factor GAMYB 86 132 - -
Vvi6g1073 524 Gene3D - 86 132 - -
Vvi6g1073 524 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Vvi6g1073 524 CDD SANT 86 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1073 Vvi-Chr6 15016366 15020524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1073 4 519 MYB Transcription Factor Family AT5G06100 39.130 7.22e-91 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi6g1073 Myb_DNA-binding 8.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1073 K09422 - vvi:100246221 1060.06