Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1072 ATGGCTGATGATGTATCTTGCGAAGGCCAAGAGGGGCAGAACTTGGCCCCCGGTGGTTCACCAGAAGAAGGGCATTCTTTGAATCTTATCAAGATTCAAACGGGAGGTGGTGAAGAAGATTATGATACGGGGAAAAGGAGGGCAGTGATAATGAAGACAGAAGTGGTATGCAGCTCCAACAGCGAAGGGTTGCGTTGTTCAAAAGCTTTTAAGATTCAGACAAGAGCTCTCCTTGATGAGCAGGATTCCGACAAGAATAAGACTTCGAACCTCAAGAATGATGGATCGGAGGGTGGTGTTTCTGAGAAGAATACTGGAAGCGAAGCCTTGTGCCCTGTTTGTTCCAAGAGTTTCCGTTCGAAGAAGGCCGTGTACGGGCACATGAGGTGCCATCCTGATAGAGAATGGAGGGGGATCAATCCTCCGCCCTCGGCCAAGTCTGATTCTTGCTCCACTGTGTCGAAGAAAAATGATGATTTGAGCCCTTCAGCCATGAAATCAACTGTGGTTTCGTCAGATACTAGTCCTTCTCAGCCTCTTCTGCCCTGGACGAAAACTGGAAGGAGGGGCAAGAATCACCCCTTGAGCTCATCTTCTACTTCGGTTTTGTCCGGTGATCTCAGTTTATCGCATAAACATGGAGTTAAGAACAAGAAACAAGTTTCTGAATGTTTAGGAGAGAAGAAGAGGAAACAAGTTGTGGTGTTACAACTTGGAAGCTTGAGAAATTATCCATCAAAAGAGGTGAGCATTGATGGAAGAGGGACTCTGATGCTGAAAGAGAAGGCTTTGATAGATACTGAGTTAGGGCCCAGAGATGCAGGCCATGACAACAACATAGAGGAGGAATCAGGTAGCAAGAACACTACTGATAGAAGCAAAAACGGAAACAAGCTCGATCAAAAAATAGTAAGCGAGTCGCCTCTTGTGGCACCCAGGGAGCATAAGTGCAGCACTTGCCATAAGGTCTTCCCAACTTTCCAGGCCTTAGGTGGACACAGGTCTAGCCATAGTTATAAGAACAACCTCCAAGCCATGGATGCCGGAGAAGAAGAGTCTAAAGAAGGTAGCTCCAAGGTGGTGGTAGATGGGTTCAAGTGCAACATTTGCAGCAAAAACTTCCGGTCGGGTCAGGCTCTTGGAGGCCACAAGAGGGCTCACTTTCAGGGATCAACCCAAGCCACACCCACCCAAGACTCGGCCTCTGGAAAAGCCAGCGAAAGTATGGGAAATAAAGTGCTAGGTTTTGATCTCAATGAGCTTCCTCGAATGGATGAATGA 1281 0.4738 MADDVSCEGQEGQNLAPGGSPEEGHSLNLIKIQTGGGEEDYDTGKRRAVIMKTEVVCSSNSEGLRCSKAFKIQTRALLDEQDSDKNKTSNLKNDGSEGGVSEKNTGSEALCPVCSKSFRSKKAVYGHMRCHPDREWRGINPPPSAKSDSCSTVSKKNDDLSPSAMKSTVVSSDTSPSQPLLPWTKTGRRGKNHPLSSSSTSVLSGDLSLSHKHGVKNKKQVSECLGEKKRKQVVVLQLGSLRNYPSKEVSIDGRGTLMLKEKALIDTELGPRDAGHDNNIEEESGSKNTTDRSKNGNKLDQKIVSESPLVAPREHKCSTCHKVFPTFQALGGHRSSHSYKNNLQAMDAGEEESKEGSSKVVVDGFKCNICSKNFRSGQALGGHKRAHFQGSTQATPTQDSASGKASESMGNKVLGFDLNELPRMDE* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1072 426 Pfam C2H2-type zinc finger 111 133 - -
Vvi6g1072 426 Pfam C2H2-type zinc finger 315 337 - -
Vvi6g1072 426 Pfam C2H2-type zinc finger 365 387 - -
Vvi6g1072 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 365 387 IPR013087 -
Vvi6g1072 426 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 84 425 IPR044653 GO:0003700
Vvi6g1072 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 315 342 IPR013087 -
Vvi6g1072 426 MobiDBLite consensus disorder prediction 77 91 - -
Vvi6g1072 426 MobiDBLite consensus disorder prediction 144 182 - -
Vvi6g1072 426 ProSitePatterns Zinc finger C2H2 type domain signature. 317 337 IPR013087 -
Vvi6g1072 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Vvi6g1072 426 MobiDBLite consensus disorder prediction 190 207 - -
Vvi6g1072 426 MobiDBLite consensus disorder prediction 388 407 - -
Vvi6g1072 426 SMART c2h2final6 365 387 IPR013087 -
Vvi6g1072 426 SMART c2h2final6 109 131 IPR013087 -
Vvi6g1072 426 SMART c2h2final6 315 337 IPR013087 -
Vvi6g1072 426 MobiDBLite consensus disorder prediction 132 215 - -
Vvi6g1072 426 SUPERFAMILY beta-beta-alpha zinc fingers 365 389 IPR036236 -
Vvi6g1072 426 MobiDBLite consensus disorder prediction 268 299 - -
Vvi6g1072 426 MobiDBLite consensus disorder prediction 1 43 - -
Vvi6g1072 426 MobiDBLite consensus disorder prediction 77 106 - -
Vvi6g1072 426 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Vvi6g1072 426 MobiDBLite consensus disorder prediction 268 307 - -
Vvi6g1072 426 MobiDBLite consensus disorder prediction 381 426 - -
Vvi6g1072 426 ProSitePatterns Zinc finger C2H2 type domain signature. 367 387 IPR013087 -
Vvi6g1072 426 MobiDBLite consensus disorder prediction 92 106 - -
Vvi6g1072 426 Gene3D Classic Zinc Finger 313 387 - -
Vvi6g1072 426 SUPERFAMILY beta-beta-alpha zinc fingers 110 337 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1072 Vvi-Chr6 15013314 15014594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1072 273 422 C2H2 Transcription Factor Family AT5G43170 34.437 6.53e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g1072 zf-C2H2_6 1.5e-09 CL0361