Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1071 ATGGGGGAAGCTGTACCTTGTGACGGCGAAGAGAGGCAAGGTTTAGGCTCCGCTGGTTTACCTGAAAATTGGCTTTCTTTGAAGCCAATCAACATTCCGATGGGAGGTGGCGACGAAGTTGATGATGGGAAAAGCGGTAAAGTAATAGTGGAGGCAAGACTGGAATGCAACATCAGCAGCAAAGGGTTGGGTTGTTCAGAAGGTTTCAAGGGTCGGATGAGAGCTCGCCTTGATGATCAGGGCAACAGAGTCGGTCGTTCCAACAAGAATAAGACTCGGAACCTCAAGAACGGATCAGAGAGTGGTGTTGCTGAGAATATTGGTGGAACTGATCAAGCCAAGTGCCCTGTTTGTTCCAAGGGTTTCCATTCGAAGAAGGCCATGTACGGGCACATGCGGTGCCATCCTGAGAGAGAATGGAGGGGGATCAATCCTCCGCCCTTCGCCAAGACTGTTTCTTGCTCCTCTGTGTCTCAGGGAATTGATGGATTGAGCCATGCGTCCATGACATCGACCGTGGTTTCATCTGATATTAGTCCTTCTCAGCCTCCTTTACAGTTGACGAAAACTGGAATGAGGGGCCAGAATCGCATCATCAACTCGTATTCTTCTTCGGGTTCGTCCTGTAATATCAGCTCATCGCAGAAGAAAGAAAGTGAGGAAAAGCATCAAGTTTCTGAATGTGTAGGCCTGCAGAAGAGGCAACAAATGAAGATGTTACAAGTTGGGAAGCTAATTAGGGATTATCCATCCAAGAAGCTGAAAATCCATGAAAGAGGAGCTTTGGGGTTCAGAGGCCAAGAAGATGCTGGAAACAAAGGGGGTGCTTCTTGGAAGGATTTTCTAAAAACAGGGTTCAATTTGGGACCAAAAGAAGTTGATACGGACAAGAAGAGTAGTGATGATAGAATTATACCTGGGGGACAACTTGATGATCAGATTGCAAAGAATACAAAGAAGACCCCAAAGTTCGTAAGCTATATGGATGTTTCTGATAATAAGCGATTTCTGAAGACATTATTACCGAGGACATATAAACACGGCGCTCGCAATAAAGCCTTTCCGACTTACCAAGCCTTGACCATGGGGAATAAGCATGCATCATCTTCACATACCGCAGCTTCTGAGGAAGAAGGCCTAGCCGTTGGCACTTCCAAGCATGCCAAACAAGTGGTTCAAAAAGCCCACAAGTGCCGGACCTGCAACAAGAGCTTCCCCACGGGTCAGGCTCTTGGGGGCCACCAGACATCTCATCGGCAGAAGCCAGCCCAATTAGCCACACCCAGACAAGAAGCATTAATATTGTCTGATGAAGAAGCCAGCCAGAGTGCAGGCCCAAGAGTTTTGGATTTCGATCTCAATGAGCTTCCCCCGATGGAAGAAGAATGA 1389 0.4744 MGEAVPCDGEERQGLGSAGLPENWLSLKPINIPMGGGDEVDDGKSGKVIVEARLECNISSKGLGCSEGFKGRMRARLDDQGNRVGRSNKNKTRNLKNGSESGVAENIGGTDQAKCPVCSKGFHSKKAMYGHMRCHPEREWRGINPPPFAKTVSCSSVSQGIDGLSHASMTSTVVSSDISPSQPPLQLTKTGMRGQNRIINSYSSSGSSCNISSSQKKESEEKHQVSECVGLQKRQQMKMLQVGKLIRDYPSKKLKIHERGALGFRGQEDAGNKGGASWKDFLKTGFNLGPKEVDTDKKSSDDRIIPGGQLDDQIAKNTKKTPKFVSYMDVSDNKRFLKTLLPRTYKHGARNKAFPTYQALTMGNKHASSSHTAASEEEGLAVGTSKHAKQVVQKAHKCRTCNKSFPTGQALGGHQTSHRQKPAQLATPRQEALILSDEEASQSAGPRVLDFDLNELPPMEEE* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1071 462 MobiDBLite consensus disorder prediction 406 424 - -
Vvi6g1071 462 MobiDBLite consensus disorder prediction 78 105 - -
Vvi6g1071 462 Pfam C2H2-type zinc finger 395 421 - -
Vvi6g1071 462 Pfam C2H2-type zinc finger 114 137 - -
Vvi6g1071 462 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Vvi6g1071 462 ProSitePatterns Zinc finger C2H2 type domain signature. 398 418 IPR013087 -
Vvi6g1071 462 MobiDBLite consensus disorder prediction 365 384 - -
Vvi6g1071 462 MobiDBLite consensus disorder prediction 406 462 - -
Vvi6g1071 462 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 45 461 IPR044653 GO:0003700
Vvi6g1071 462 SMART c2h2final6 396 418 IPR013087 -
Vvi6g1071 462 SMART c2h2final6 113 135 IPR013087 -
Vvi6g1071 462 MobiDBLite consensus disorder prediction 201 221 - -
Vvi6g1071 462 MobiDBLite consensus disorder prediction 1 23 - -
Vvi6g1071 462 MobiDBLite consensus disorder prediction 87 105 - -
Vvi6g1071 462 Gene3D Classic Zinc Finger 368 446 - -
Vvi6g1071 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 396 423 IPR013087 -
Vvi6g1071 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Vvi6g1071 462 SUPERFAMILY beta-beta-alpha zinc fingers 114 418 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1071 Vvi-Chr6 15005234 15006622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1071 115 159 C2H2 Transcription Factor Family AT4G35280 55.556 3.30e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g1071 zf-C2H2_6 1.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1071 - - vvi:104879681 908.672