Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1070 ATGGGGGAAGCTGTACCTTGTGACGGCGAAGAGAGGCAAGGTTTAGGCTCCGCTGGTTTACCGGAAAATTGGCTTTCTTCGAAGCCAATCAACACTCCGATGGGAGGTGGCGACGAAGTTGATGATGGGAAAAGTAATAGAGTAATAGTGGAGGCAAGACTGGAATGCAACATCAGCAGCAAAGGGTTGGGTTGTTCAGAAGGTTTCAAGGGTCGGATGAGAGCTCGCCTTGATGATCAGGGCAACAGAGTCAGTCGTTCCAACAAGAATAAGACTTGGAACCTCAAGAACGGATCAGAGGGTGGTGTTGCTGAGAATATTGGTGGAACTGATCAAGCCAAGTGCCCTGTTTGTTCCAAGAATTTCCATTCGAAGAAGGCCATGTACGGGCACATGAGGTGCCATCCTGAGAGAGAATGGAGGGGGATCGATCCTCCGCCCTCCGCCAAGACTGTTTCTTGCTCCTCTGTGTCGCAGGGAATTGATGGTTTGAGCCATGCGTCCATGACATCGACCGTGGTTTCATCTGATATTAGTCCTTCTCAGCCTCCTTTGCAGTGGACGAAAACTGGAAGGAGGGGCCAGAATCGCATCATCAACTTATATTCTTCTTCGGGTTCGTCCTGTAATATCAGCTCATCGCAGAACAAAGGAATTGAGGAAAAGCATCAAGTTTCTGAACGTGCAGGCCTGCAGAAGAGGCAACAACTTAAGATGTTACAAGTTGGGAACCTAAGGGATTATCCATCCAAGAAGCTGAAAATCCATGAAAGAGGGGCTTTGGGGTTCAGAGGCCAAGAAGATGCTGGAAACAAAAGTGGTGCTTCTTGGAAGGACTTTCTAAAAATAGGGTTCAATTTGGGACCAAAAGAAGTTGATACGGACAAGAAGAGTAGTGATGATAGAATTATACCTGGGGGACAACTTGATGATCAGATTGCAAAGAATACAAAGAAGAGGACTCCAAAGTTCGTAAGCTATATGGATGTTTCTGATAATAACCGGTTTCTGAAGACATTATTACCGAGGAAATATAAATGCGGCACTTTTCCGACTTACCAAGCCTTGACCATGGGGAATAAATATGCATCATCTTCACATACCGCAGCTTCTGAGGAAGAAGGCCAAGCCCTTGGCACTTCCAAGCATGCCAAGCAGGTGGTGCAAAAATCCCACAAGTGCCGGATCTGCAACAAGAGCTTCCCCACGGGTCAGGCTCTTGGGGGCCACCAGATAACTCACCGGCCGAAGCCAGCCCAATTAGCTACAACCAAGCAAGAAGCCAGCCAGAATGCAGGTCCAAGAGTTTTGGATTTTGATCTCAACGAGCTTCCCCCAATGGGAAAAGAATGA 1353 0.4752 MGEAVPCDGEERQGLGSAGLPENWLSSKPINTPMGGGDEVDDGKSNRVIVEARLECNISSKGLGCSEGFKGRMRARLDDQGNRVSRSNKNKTWNLKNGSEGGVAENIGGTDQAKCPVCSKNFHSKKAMYGHMRCHPEREWRGIDPPPSAKTVSCSSVSQGIDGLSHASMTSTVVSSDISPSQPPLQWTKTGRRGQNRIINLYSSSGSSCNISSSQNKGIEEKHQVSERAGLQKRQQLKMLQVGNLRDYPSKKLKIHERGALGFRGQEDAGNKSGASWKDFLKIGFNLGPKEVDTDKKSSDDRIIPGGQLDDQIAKNTKKRTPKFVSYMDVSDNNRFLKTLLPRKYKCGTFPTYQALTMGNKYASSSHTAASEEEGQALGTSKHAKQVVQKSHKCRICNKSFPTGQALGGHQITHRPKPAQLATTKQEASQNAGPRVLDFDLNELPPMGKE* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1070 450 Pfam C2H2-type zinc finger 114 137 - -
Vvi6g1070 450 Pfam C2H2-type zinc finger 392 416 - -
Vvi6g1070 450 MobiDBLite consensus disorder prediction 1 44 - -
Vvi6g1070 450 MobiDBLite consensus disorder prediction 407 450 - -
Vvi6g1070 450 ProSitePatterns Zinc finger C2H2 type domain signature. 394 414 IPR013087 -
Vvi6g1070 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 392 419 IPR013087 -
Vvi6g1070 450 SMART c2h2final6 113 135 IPR013087 -
Vvi6g1070 450 SMART c2h2final6 392 414 IPR013087 -
Vvi6g1070 450 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Vvi6g1070 450 MobiDBLite consensus disorder prediction 417 431 - -
Vvi6g1070 450 MobiDBLite consensus disorder prediction 79 98 - -
Vvi6g1070 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Vvi6g1070 450 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 39 447 IPR044653 GO:0003700
Vvi6g1070 450 Gene3D Classic Zinc Finger 365 436 - -
Vvi6g1070 450 SUPERFAMILY beta-beta-alpha zinc fingers 114 414 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1070 Vvi-Chr6 15002349 15003701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1070 115 159 C2H2 Transcription Factor Family AT4G35280 53.333 5.00e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g1070 zf-C2H2_6 1.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1070 - - vvi:104879682 908.286