Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g1070 | ATGGGGGAAGCTGTACCTTGTGACGGCGAAGAGAGGCAAGGTTTAGGCTCCGCTGGTTTACCGGAAAATTGGCTTTCTTCGAAGCCAATCAACACTCCGATGGGAGGTGGCGACGAAGTTGATGATGGGAAAAGTAATAGAGTAATAGTGGAGGCAAGACTGGAATGCAACATCAGCAGCAAAGGGTTGGGTTGTTCAGAAGGTTTCAAGGGTCGGATGAGAGCTCGCCTTGATGATCAGGGCAACAGAGTCAGTCGTTCCAACAAGAATAAGACTTGGAACCTCAAGAACGGATCAGAGGGTGGTGTTGCTGAGAATATTGGTGGAACTGATCAAGCCAAGTGCCCTGTTTGTTCCAAGAATTTCCATTCGAAGAAGGCCATGTACGGGCACATGAGGTGCCATCCTGAGAGAGAATGGAGGGGGATCGATCCTCCGCCCTCCGCCAAGACTGTTTCTTGCTCCTCTGTGTCGCAGGGAATTGATGGTTTGAGCCATGCGTCCATGACATCGACCGTGGTTTCATCTGATATTAGTCCTTCTCAGCCTCCTTTGCAGTGGACGAAAACTGGAAGGAGGGGCCAGAATCGCATCATCAACTTATATTCTTCTTCGGGTTCGTCCTGTAATATCAGCTCATCGCAGAACAAAGGAATTGAGGAAAAGCATCAAGTTTCTGAACGTGCAGGCCTGCAGAAGAGGCAACAACTTAAGATGTTACAAGTTGGGAACCTAAGGGATTATCCATCCAAGAAGCTGAAAATCCATGAAAGAGGGGCTTTGGGGTTCAGAGGCCAAGAAGATGCTGGAAACAAAAGTGGTGCTTCTTGGAAGGACTTTCTAAAAATAGGGTTCAATTTGGGACCAAAAGAAGTTGATACGGACAAGAAGAGTAGTGATGATAGAATTATACCTGGGGGACAACTTGATGATCAGATTGCAAAGAATACAAAGAAGAGGACTCCAAAGTTCGTAAGCTATATGGATGTTTCTGATAATAACCGGTTTCTGAAGACATTATTACCGAGGAAATATAAATGCGGCACTTTTCCGACTTACCAAGCCTTGACCATGGGGAATAAATATGCATCATCTTCACATACCGCAGCTTCTGAGGAAGAAGGCCAAGCCCTTGGCACTTCCAAGCATGCCAAGCAGGTGGTGCAAAAATCCCACAAGTGCCGGATCTGCAACAAGAGCTTCCCCACGGGTCAGGCTCTTGGGGGCCACCAGATAACTCACCGGCCGAAGCCAGCCCAATTAGCTACAACCAAGCAAGAAGCCAGCCAGAATGCAGGTCCAAGAGTTTTGGATTTTGATCTCAACGAGCTTCCCCCAATGGGAAAAGAATGA | 1353 | 0.4752 | MGEAVPCDGEERQGLGSAGLPENWLSSKPINTPMGGGDEVDDGKSNRVIVEARLECNISSKGLGCSEGFKGRMRARLDDQGNRVSRSNKNKTWNLKNGSEGGVAENIGGTDQAKCPVCSKNFHSKKAMYGHMRCHPEREWRGIDPPPSAKTVSCSSVSQGIDGLSHASMTSTVVSSDISPSQPPLQWTKTGRRGQNRIINLYSSSGSSCNISSSQNKGIEEKHQVSERAGLQKRQQLKMLQVGNLRDYPSKKLKIHERGALGFRGQEDAGNKSGASWKDFLKIGFNLGPKEVDTDKKSSDDRIIPGGQLDDQIAKNTKKRTPKFVSYMDVSDNNRFLKTLLPRKYKCGTFPTYQALTMGNKYASSSHTAASEEEGQALGTSKHAKQVVQKSHKCRICNKSFPTGQALGGHQITHRPKPAQLATTKQEASQNAGPRVLDFDLNELPPMGKE* | 451 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g1070 | 450 | Pfam | C2H2-type zinc finger | 114 | 137 | - | - | |
Vvi6g1070 | 450 | Pfam | C2H2-type zinc finger | 392 | 416 | - | - | |
Vvi6g1070 | 450 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Vvi6g1070 | 450 | MobiDBLite | consensus disorder prediction | 407 | 450 | - | - | |
Vvi6g1070 | 450 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 394 | 414 | IPR013087 | - | |
Vvi6g1070 | 450 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 392 | 419 | IPR013087 | - | |
Vvi6g1070 | 450 | SMART | c2h2final6 | 113 | 135 | IPR013087 | - | |
Vvi6g1070 | 450 | SMART | c2h2final6 | 392 | 414 | IPR013087 | - | |
Vvi6g1070 | 450 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 115 | 135 | IPR013087 | - | |
Vvi6g1070 | 450 | MobiDBLite | consensus disorder prediction | 417 | 431 | - | - | |
Vvi6g1070 | 450 | MobiDBLite | consensus disorder prediction | 79 | 98 | - | - | |
Vvi6g1070 | 450 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 113 | 140 | IPR013087 | - | |
Vvi6g1070 | 450 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 39 | 447 | IPR044653 | GO:0003700 | |
Vvi6g1070 | 450 | Gene3D | Classic Zinc Finger | 365 | 436 | - | - | |
Vvi6g1070 | 450 | SUPERFAMILY | beta-beta-alpha zinc fingers | 114 | 414 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi6g1070 | Vvi-Chr6 | 15002349 | 15003701 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi6g1070 | 115 | 159 | C2H2 Transcription Factor Family | AT4G35280 | 53.333 | 5.00e-11 | 61.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vvi6g1070 | zf-C2H2_6 | 1.5e-10 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g1070 | - | - | vvi:104879682 | 908.286 |