Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1069 ATGGCTGATGATGTACCTTGTGAAGCCGAAGAGAGGCAGAACTTGGCTCCCGGTGGTTCACCAGAAAATAGGATTTCTTTGAAGTTTATCAACATTCCCAAGGAAGGTGGAGAAGAAGGTTCTGATAAAAGGGGAGGAGTGATAATGAAGGCAACACTCGTATGCAGCTTCAACAGCAAAGGGTTAGGTTGTACAAAAGCTTTGAAGGGCCCGAGGAGAGCTCTCCTTGATGATCATGGTAACTGGGGCAGTGATTCCAACAAGAATGCGACTTCAAACCTCAAGAATGGATCGGAGGCTAGAAGCAAAGCCATGTGCCCTGTTTGTTCCGAGGTTTTCCAATCGAAGAAGGCCATGTACGGGCACATGAGGTGCCATCCTGAGAGAGAATGGAGGGGGATCAGTCCTCCACTCTCGGCCAAGACTGGTTCTTGCTCCACTGTGTGGCAGAAAAATGATGAATTGAGCCCTTCAGCCATGAAATCAACTGTGGTTTCATCTGATACTAGTCCTTCTAAGCCTCTTCTGCGCTGGACGAAAACTGGAAGGAGGGGGCAGAATCACCCCTTGAGCTCATCTTCTACTTCTGTTTCGTCCAGTGATCTCAGTTTATCGCATAAATATGGAGTTAAGAACAAGAATCAAGTTTCTGAATGTTCAGGAGAGAAGAAGAGGCAAAAAGTTGAGGTGTTACAACTTGGAAGCTTGAGAAATTATCCATCAAAAGAAGTGAACATTGATGGAAGAGGGACTCTGATGCTGAAAGAGAAGGCTTTGATAGACACTGAGTTAGGTCCCAGACAAGCAGGCCTTGACAACAACATAGGGGAGGAATCAGGTAGCAAGAACACTACTGATAGAAGCAAAAACGGAAACAAGCTCGATCAAGAAATAGTAAGCGAGTTGCTTCTTGTGGCACCCAGGGAGTATAAGTGCAGCACTTGCGATAAGATCTTCCCAACTTTCCAAGGCTTAGGTGGACACAGGTCTAGCCATAGTTATAAAAACAACCTCCAATCGATGGATACCGGAGAAGAAAAGTCTAAAGAAGGTGGCTCCAAGGCGGTGGTAGATGGGTTCAAGTGCAATATTTGCAGCAAAACCTTCCCATCCGGTCAGGCTCTTGGAGGCCACAAGAGGATTCACTTTCAAGGATCAACCCAAGCAGCACCCAGACAAGGCTCGGCCTCTGGAAAATCCAGCAAATGTTTGGGAGATAAAGTGCTAGATTTTGACCTCAATGAGCTTCCTCCAATGGAGGAATGA 1266 0.4637 MADDVPCEAEERQNLAPGGSPENRISLKFINIPKEGGEEGSDKRGGVIMKATLVCSFNSKGLGCTKALKGPRRALLDDHGNWGSDSNKNATSNLKNGSEARSKAMCPVCSEVFQSKKAMYGHMRCHPEREWRGISPPLSAKTGSCSTVWQKNDELSPSAMKSTVVSSDTSPSKPLLRWTKTGRRGQNHPLSSSSTSVSSSDLSLSHKYGVKNKNQVSECSGEKKRQKVEVLQLGSLRNYPSKEVNIDGRGTLMLKEKALIDTELGPRQAGLDNNIGEESGSKNTTDRSKNGNKLDQEIVSELLLVAPREYKCSTCDKIFPTFQGLGGHRSSHSYKNNLQSMDTGEEKSKEGGSKAVVDGFKCNICSKTFPSGQALGGHKRIHFQGSTQAAPRQGSASGKSSKCLGDKVLDFDLNELPPMEE* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1069 421 MobiDBLite consensus disorder prediction 184 204 - -
Vvi6g1069 421 Pfam C2H2-type zinc finger 106 128 - -
Vvi6g1069 421 Pfam C2H2-type zinc finger 310 332 - -
Vvi6g1069 421 Pfam C2H2-type zinc finger 360 382 - -
Vvi6g1069 421 MobiDBLite consensus disorder prediction 265 293 - -
Vvi6g1069 421 ProSitePatterns Zinc finger C2H2 type domain signature. 362 382 IPR013087 -
Vvi6g1069 421 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 38 178 IPR044653 GO:0003700
Vvi6g1069 421 MobiDBLite consensus disorder prediction 157 176 - -
Vvi6g1069 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 310 337 IPR013087 -
Vvi6g1069 421 Gene3D Classic Zinc Finger 308 382 - -
Vvi6g1069 421 MobiDBLite consensus disorder prediction 1 24 - -
Vvi6g1069 421 SUPERFAMILY beta-beta-alpha zinc fingers 308 382 IPR036236 -
Vvi6g1069 421 MobiDBLite consensus disorder prediction 385 404 - -
Vvi6g1069 421 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Vvi6g1069 421 MobiDBLite consensus disorder prediction 328 351 - -
Vvi6g1069 421 MobiDBLite consensus disorder prediction 386 400 - -
Vvi6g1069 421 ProSitePatterns Zinc finger C2H2 type domain signature. 312 332 IPR013087 -
Vvi6g1069 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 360 382 IPR013087 -
Vvi6g1069 421 MobiDBLite consensus disorder prediction 157 204 - -
Vvi6g1069 421 SMART c2h2final6 104 126 IPR013087 -
Vvi6g1069 421 SMART c2h2final6 360 382 IPR013087 -
Vvi6g1069 421 SMART c2h2final6 310 332 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1069 Vvi-Chr6 14989117 14990382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1069 310 421 C2H2 Transcription Factor Family AT1G27730 40.476 1.25e-16 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g1069 zf-C2H2_6 4.2e-10 CL0361