Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1068 ATGGCTGAATCTGTACCTTGTGAGGGCGAAGAGAGGCGAGGTTTAGGCTCCAGCGGTTTACGAGAAAATAGGCTTTCTTTGAAGCCAATCAACATTCCGATGGGAGGTAGCGACGAAGGTGATAATGGGAAAGGTAGAAGAGCAGTACTTGAGGCAAGATTGGAATGCATGATCAGCAGCAAAGGGTTGGGTTGTTCAAAAGCTTTCGAGGGTCGGATGAGAGCTCGCCTTGATGATCAGGGCGACAGAGATTCCAACAAGAATAAGACTTGGAACCTCAAGAACGGATCAGAGGAAGCCAAGTGCCCTGTTTGTTCCAAGAGTTTCCATTCGAAGAAGGCCATGCACGGGCACATGAGGTGCCATCCTGAGAGAGAATGGAGGGGGATCAATCCTCCGCCCTCAACCAAGACTGCTTCTTGCTCCTCTGCGTCGCAGGAAATTGATGGTTTGAGCCATGCGTCCATGACATCGACTGTGGTTTCATCTGATATTAGTCCTTCCGAGCCTCCTCTGCAGTGGACGAAAAATGGAAGGAGGGGCCAGAATCGCATCATCAACTCATATTCTTCTTCGGGTTCGTCCTGTAATATCAGCTCATCGCAGAATAAAGGAATTGTGGAAAAGCATCAAGTTTCTGAACGTGCAGGCCTGCAGAAGAGGCAACAACTTAAGATGTTACAAGTTGGGAACCTAAGGGATTATCCATCCAAGAAGCTGAAAATCCATGAAAGAGGGGCTTTGGGGTTCAGAGGCCAAGAAGATGCTGGAAACAAAAGTGGTGCTTCTTGGAAGGACTTTCTAAAAATAGGGTTCAATTTGGGACCAAAAGAAGTTGATACGGACAAGAAGAGTAGTGATGATAGAATTATACCTGAGGGACAACTTGATGATCAGATTGCAAAGAATACAAAGAAGAGGACTCCAAAGTTCGTAAGCTATATGGATGTTTCTCATAATAACCGGTTTCTGAAGACATTATTACCGAGGAAATATAAATGCGGCACTTGCAATAAAACCTTTCCGACTTACCAAGCCTTGACCATGGGGAATAAATATGCATCATCTTCACATACCGCAGCTTCTGAGGAAGAAGGCCAAGCCCTTGGCACTTCCAAGCATGCCAAGCAGGTGGTGCAAAAATCCCACAAGTGCCGGATCTGCAACAAGAGCTTCCCCACGGGTCAGGCTCTTGGGGGCCACCAGACAACTCACCGGCCGAAGCCAGCCCAATTAGCTACAACCAAGCAAGAAGCCAGCCAGAATGCAGGTCCAAGAGTTTTGGATTTTGATCTCAACGAGCTTCCCCCAATGGAAAAAGAATGA 1326 0.4713 MAESVPCEGEERRGLGSSGLRENRLSLKPINIPMGGSDEGDNGKGRRAVLEARLECMISSKGLGCSKAFEGRMRARLDDQGDRDSNKNKTWNLKNGSEEAKCPVCSKSFHSKKAMHGHMRCHPEREWRGINPPPSTKTASCSSASQEIDGLSHASMTSTVVSSDISPSEPPLQWTKNGRRGQNRIINSYSSSGSSCNISSSQNKGIVEKHQVSERAGLQKRQQLKMLQVGNLRDYPSKKLKIHERGALGFRGQEDAGNKSGASWKDFLKIGFNLGPKEVDTDKKSSDDRIIPEGQLDDQIAKNTKKRTPKFVSYMDVSHNNRFLKTLLPRKYKCGTCNKTFPTYQALTMGNKYASSSHTAASEEEGQALGTSKHAKQVVQKSHKCRICNKSFPTGQALGGHQTTHRPKPAQLATTKQEASQNAGPRVLDFDLNELPPMEKE* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1068 441 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Vvi6g1068 441 SMART c2h2final6 332 358 IPR013087 -
Vvi6g1068 441 SMART c2h2final6 383 405 IPR013087 -
Vvi6g1068 441 SMART c2h2final6 100 122 IPR013087 -
Vvi6g1068 441 MobiDBLite consensus disorder prediction 396 422 - -
Vvi6g1068 441 ProSitePatterns Zinc finger C2H2 type domain signature. 385 405 IPR013087 -
Vvi6g1068 441 MobiDBLite consensus disorder prediction 116 181 - -
Vvi6g1068 441 Gene3D Classic Zinc Finger 329 405 - -
Vvi6g1068 441 MobiDBLite consensus disorder prediction 1 44 - -
Vvi6g1068 441 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 41 440 IPR044653 GO:0003700
Vvi6g1068 441 MobiDBLite consensus disorder prediction 133 181 - -
Vvi6g1068 441 MobiDBLite consensus disorder prediction 396 441 - -
Vvi6g1068 441 SUPERFAMILY beta-beta-alpha zinc fingers 380 407 IPR036236 -
Vvi6g1068 441 Pfam C2H2-type zinc finger 101 124 - -
Vvi6g1068 441 Pfam C2H2-type zinc finger 383 407 - -
Vvi6g1068 441 Pfam C2H2-type zinc finger 332 348 - -
Vvi6g1068 441 SUPERFAMILY beta-beta-alpha zinc fingers 101 348 IPR036236 -
Vvi6g1068 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Vvi6g1068 441 MobiDBLite consensus disorder prediction 1 18 - -
Vvi6g1068 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 383 410 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1068 Vvi-Chr6 14981645 14982970 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1068 330 441 C2H2 Transcription Factor Family AT2G28710 40.984 1.59e-14 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g1068 zf-C2H2_6 2.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1068 - - vvi:104879685 865.914