Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1066 ATGAGCCAAGAGTATGGTGGAGCTTGCAGGGACCATGAACCAAGAGTGTTGTGTAGGTTCTGCAACAAAGGGTTCAGTTCCTGGAATGCTTTGACGGGTCACATGAAAATTCACAGCAATGTGAATATGGTTCACAGCTTGGAGGACAACAAACAGGTGGAACTGGAAGATCCTTTGGATCCACCAAAAAATGGAGATAACCATGATCTTGATGAGAATGATGGAGAAGGTACGTCCAGTTGCTTTGTCTGTAACAAGAATTTTAGGTCATTGCACGCCTTATTTGGGCACATGAGGTGCCATCCCAACAGGCCATGGAGGGGAATCCATCCTCCTCCCCCAAGGGCTAAGACTACTTCTGGTTCTACCTCGACTTTGTCCACTGAATATAAGTATACTTTGGTTGCCTCAGGCGCTAATTCCTGTGAATCTTTTCCATGTTGGATCACAACCAGAAAGAGGAGACAGAAGCGAATGATGCTAGCTCATGTAGGACGTTCATTCCATAGTCCCAACCTGTCAGAGAAGCTAGGCATTGAGGACAGCAGCCAAACAGAAGAGGCTGAAAATGAAAGCTCAGGCCTGCACAAGAGACAGCAAATCTTGCTAGAACATGAGTTTGACCTGGAATCAACCAAGGAGAGGAAGATGGAAGAGGAATGGCAGTGTAAAAACACTCATGGGAGCCTGCCTGATCAGGAACAGCTCCAAGAGATTGGAAGGAAAAGCACTGAGAAGATGAACACAGGAATAGTAGATCCTGATGCTTCCCTTATGCATTTTACGCAGATTTGCAACAAGACCCTCCTGATGGATCAGGGTCTGGGCATCCATGAAAGGACTCACTGGCAGGGACTAGCTGAAGCTGCATTCAGTCAAGAAGGATCACTGGGAGAGGCCAGCCCTACCACTGGCCGAAGAGTTTTAGATTTTGATCTTAATGATCTTCCTCCTATGGAAGAATGA 966 0.4658 MSQEYGGACRDHEPRVLCRFCNKGFSSWNALTGHMKIHSNVNMVHSLEDNKQVELEDPLDPPKNGDNHDLDENDGEGTSSCFVCNKNFRSLHALFGHMRCHPNRPWRGIHPPPPRAKTTSGSTSTLSTEYKYTLVASGANSCESFPCWITTRKRRQKRMMLAHVGRSFHSPNLSEKLGIEDSSQTEEAENESSGLHKRQQILLEHEFDLESTKERKMEEEWQCKNTHGSLPDQEQLQEIGRKSTEKMNTGIVDPDASLMHFTQICNKTLLMDQGLGIHERTHWQGLAEAAFSQEGSLGEASPTTGRRVLDFDLNDLPPMEE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1066 321 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
Vvi6g1066 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Vvi6g1066 321 Gene3D Classic Zinc Finger 3 105 - -
Vvi6g1066 321 SMART c2h2final6 79 101 IPR013087 -
Vvi6g1066 321 SMART c2h2final6 16 38 IPR013087 -
Vvi6g1066 321 MobiDBLite consensus disorder prediction 171 200 - -
Vvi6g1066 321 Pfam C2H2-type zinc finger 18 38 - -
Vvi6g1066 321 SUPERFAMILY beta-beta-alpha zinc fingers 17 101 IPR036236 -
Vvi6g1066 321 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 17 39 - -
Vvi6g1066 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 16 43 IPR013087 -
Vvi6g1066 321 Pfam C2H2-type zinc finger 81 102 - -
Vvi6g1066 321 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Vvi6g1066 321 MobiDBLite consensus disorder prediction 294 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1066 Vvi-Chr6 14859576 14860541 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1066 17 117 C2H2 Transcription Factor Family AT2G26940 37.963 3.61e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g1066 zf-C2H2_6 6.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1066 - - vvi:104879686 673.7