Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1064 ATGTCCACAGCAGCTCAGAGGGTGGTGGTAATCCAGGATGCATCACGGGAAGTTAGTTCAAGTGCTGTCAAATGGGCTCTGGATGGCTTATCACTTAAGCCTGGAGATGAGCTCACTCTCCTTGGAGTTCTTCATCAGGTTAATACCCCTATGGGCTACAAAAGCAGAGTGGATTCTAATTCGATGCTTGCAGCAAACCAAAGAATGATCAATAGAGAAGTAGCAAGGAAGAAGCAAGAGTATGAAAACAGCAAGGAAGTTCTTCAGATTTCTAAGCTCTATGACACAAAGAAGGTTAAATTCAAGATAGAGGTGACGGCAGGACCTTCAACCAAGGAGGTTGCTTCAGAGGCAGCTATAAATTTACGGCCAACATGGGTGATACTTGACAGGAAAATGAAGAAAGACAGGAAATACTTCCTAGAGAAGCTTTCATGTGGGATATCAAGGATGAAACGTAATAACTGCATAGAAGAGTTGAGAGGTCCAAAAGTAAAAGGAAATTTTCAAGTAAGATATAATGAAATGATACCAGGATCCCCAGAAGAAGAGGAACTTTTCAGCATAGAAATCTTTCCTATGAAATCTTTAAATCCAGCCATAATCACCTTACATGAAGAGCCAGGAGACAACAGCAGCGGACCTACATGGAGTAATTATTCAAAATCCACTTCATGTTCTACATCCACATCAAGCCAGGAGAATACAAAAAGTTCAAGTTCAATGGCGCTGGAGACTGGTCATATACAGTGTCATGAAGAAGAAAATAAATCAAAGGCACAGGGAAAAACCGTGGAAGATAAATCAACATGTGCAGTTTTGGATAATCAAGCGGTAAGTCAAACAGGAACTGATCAAAAGAGAGAAGATAAAAAACTGACACAGAGCAACAGGGAAAATAAATCAAAGGCACAGGGAAAAACCATGGAAGATAAATCAACATGTGCAGTTTTGGATAATCAAGGGGTAAGTCAAACAGGAACTGATCAAAAGAGAGAAGATCAAAGATTGATGCAGAGAAACAGCACTGAAGATGTAATGGAAGGTCAGCAGATTGAAGAGATGTTTGATCATTTAATTTGTTCCATATGCAAGAATCGAAAGCCAAAGGAAGGATGGAAAAGAGACTTCTCATATGCAGAGCTCTTAGCTGCAACAGACGGATTTTCTGCAAAAAATTTCCTGTCTGAAGGTGGACTTGGACCAGTCTTCAGTGGTCAGCTAAAGAATATGGTCAAGATTGCTGTTAAGCAACATAGAGATCCAAAATTCCAAGAAGAGGAGGAATTCAAGTCAGAAGTGCACGCATTCAGCAAGCTTAGACATAAGAATGTTGTCAAGCTGCTGGGATCCTGTTCAGAAGGAAGTCACAGGTTCCTTGTGTATGAGTATGCATGCAATGGTTCACTGAATCAACATCTATCACAAAACAGATCAACACCTTTGACTTGGATGCTGAGGGTGAAAATAGCACTGGGTGCATCTAGAGGTTTAAATTATCTGCATCATAACAACATAATTCACAGAGATGTAAGATCAACCAACATTCTTCTGTCACATGACCATGAACCTCTGCTGGGAGATTTTGGGCTTGCAAGACCACCATTTGAATCAGACCAATCCTCAGAGCACAGGGTTGATGGGACTTTTGGATACTCAGCTCCGGAATATGTAGACAGTGGGAAAGCATCAACCAAGACAGATGTTTATTCCTTTGGTGTGGTTCTATTGGAGCTCATCACCGGCCGTGGAACTACAGACAAGACATTTGAAGGAACAAGTCTAGTGGAATGGGTAAGAAACAAAAACCCATTTTCTTTTAACTGCTACAATAAAACTTTCAATAGTTAA 1851 0.4063 MSTAAQRVVVIQDASREVSSSAVKWALDGLSLKPGDELTLLGVLHQVNTPMGYKSRVDSNSMLAANQRMINREVARKKQEYENSKEVLQISKLYDTKKVKFKIEVTAGPSTKEVASEAAINLRPTWVILDRKMKKDRKYFLEKLSCGISRMKRNNCIEELRGPKVKGNFQVRYNEMIPGSPEEEELFSIEIFPMKSLNPAIITLHEEPGDNSSGPTWSNYSKSTSCSTSTSSQENTKSSSSMALETGHIQCHEEENKSKAQGKTVEDKSTCAVLDNQAVSQTGTDQKREDKKLTQSNRENKSKAQGKTMEDKSTCAVLDNQGVSQTGTDQKREDQRLMQRNSTEDVMEGQQIEEMFDHLICSICKNRKPKEGWKRDFSYAELLAATDGFSAKNFLSEGGLGPVFSGQLKNMVKIAVKQHRDPKFQEEEEFKSEVHAFSKLRHKNVVKLLGSCSEGSHRFLVYEYACNGSLNQHLSQNRSTPLTWMLRVKIALGASRGLNYLHHNNIIHRDVRSTNILLSHDHEPLLGDFGLARPPFESDQSSEHRVDGTFGYSAPEYVDSGKASTKTDVYSFGVVLLELITGRGTTDKTFEGTSLVEWVRNKNPFSFNCYNKTFNS* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1064 616 ProSitePatterns Tyrosine protein kinases specific active-site signature. 506 518 IPR008266 GO:0004672|GO:0006468
Vvi6g1064 616 FunFam Proline-rich receptor-like protein kinase PERK8 351 464 - -
Vvi6g1064 616 PANTHER OS01G0750732 PROTEIN 233 601 - -
Vvi6g1064 616 FunFam - 466 613 - -
Vvi6g1064 616 MobiDBLite consensus disorder prediction 204 245 - -
Vvi6g1064 616 Pfam Protein tyrosine and serine/threonine kinase 392 603 IPR001245 GO:0004672|GO:0006468
Vvi6g1064 616 SMART tyrkin_6 389 614 IPR020635 GO:0004713|GO:0006468
Vvi6g1064 616 MobiDBLite consensus disorder prediction 276 346 - -
Vvi6g1064 616 SUPERFAMILY Protein kinase-like (PK-like) 379 600 IPR011009 -
Vvi6g1064 616 MobiDBLite consensus disorder prediction 284 308 - -
Vvi6g1064 616 Gene3D Transferase(Phosphotransferase) domain 1 466 613 - -
Vvi6g1064 616 Gene3D Phosphorylase Kinase; domain 1 356 464 - -
Vvi6g1064 616 MobiDBLite consensus disorder prediction 209 245 - -
Vvi6g1064 616 MobiDBLite consensus disorder prediction 314 328 - -
Vvi6g1064 616 ProSiteProfiles Protein kinase domain profile. 389 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1064 Vvi-Chr6 14846447 14850194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1064 362 600 Trihelix Transcription Factor Family AT4G32710 48.594 3.28e-62 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vvi6g1064 PK_Tyr_Ser-Thr 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1064 - - vri:117916944 719.153