Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1063 ATGGCCATCACCTTCTCGGATCTACACACTGAGGCTGGTCTCAAGTCTCTGGACGAATTCCTCTCCGGAAAAGCCTACATCTCTGGGGGTCATCTGACGAAGGATGATGTAAAGGTTTACGCCGCGGTTCTGGAGAAACCCGGAAGTCACTTCCCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGTTGAAGCTGCTCCCAAGGAAGTGAAGGAGGCTGCTCCTGCTGGAGATGATGACGATGACCTTGATCTCTTTGGTGATGAGACAGAGGAGGAGAAGAAGGCAGCAGAAGAGAGGGAGGCATCTGTTAAGGCATCCTCAAAGAAGAAAGAGAGTGGAAAATCGTCTGTTCTTTTGGATGTGAAACCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTATTGAGATGCCAGGCCTCTTGTGGGGAGCATCAAAATTGGCTCCAGTTGGTTATGGGATAAAGAAATTGCAGATCATGATGACCATTGTGGATGACCTTGTCTCTGTGGATTCCGTTATAGAAGAGCATCTCACAGTTGAACCCATAAACGAGTATGTTCAGAGTTGTGACATTGTTGCCTTCAACAAAATCTAA 681 0.4816 MAITFSDLHTEAGLKSLDEFLSGKAYISGGHLTKDDVKVYAAVLEKPGSHFPNASKWYSCVSSHLAKSFPGKAVGVSLGCQAAPVEAAPKEVKEAAPAGDDDDDLDLFGDETEEEKKAAEEREASVKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIEMPGLLWGASKLAPVGYGIKKLQIMMTIVDDLVSVDSVIEEHLTVEPINEYVQSCDIVAFNKI* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1063 226 FunFam Elongation factor 1-beta 1 like 131 226 - -
Vvi6g1063 226 SMART EF1_GNE_2 137 226 IPR014038 GO:0003746|GO:0006414
Vvi6g1063 226 SUPERFAMILY eEF-1beta-like 134 226 IPR036219 -
Vvi6g1063 226 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 101 109 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vvi6g1063 226 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 215 226 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vvi6g1063 226 CDD EF1B 140 226 IPR014038 GO:0003746|GO:0006414
Vvi6g1063 226 Gene3D - 130 226 IPR014717 -
Vvi6g1063 226 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 226 - -
Vvi6g1063 226 SUPERFAMILY GST C-terminal domain-like 10 65 IPR036282 -
Vvi6g1063 226 Pfam EF-1 guanine nucleotide exchange domain 139 226 IPR014038 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1063 Vvi-Chr6 14818209 14821408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1063 1 226 Eukaryotic Initiation Factors Gene Family AT5G12110 74.561 1.84e-108 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1063 K03232 - vvi:100261522 370.933