Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1062 ATGGCACCAATGGATGAAAGATCTTCGTCTGTTACTTCTTCGCCTCTCCAATTGTTCTCCATGATGTCACCTTCACCCAGCTTGGGATCACCATATCCATGGCTTAGAGAGCTAAAATCCGAGGAGCGGGGCCTGTGTTTGATCCATTTGCTACTCACTTGTGCAAACCATGTTGCTTCTGGTAGCCTGGAAAATGTGAATATTGCCCTGGAGCAAATCTCCCAACTTGCCTCTGCTGATGGTGATACCATGCAGCGCATTGCTGCTTACTTCACGGAGGCACTTGCTGATCGGATACTCAAGACATGGTCTGGTCTCCACAAGGCCCTCAACTCCACCAGAATATCTTTTCCTTCTGAGGATATTCTTGTTCGGAAACTATTTTTTGAGTTGTTTCCATTCTTGAAGATGGCATATGTGATCACTAACCACACTATTATTGAAGCTATGGAAGGGGAAAAGATGGTTCATATAATTGATCTCAATTCGGCTGAACCTGCACAATGGATTGCACTTCTTCAGGCCTTGAGTGCTCGCCCCGAAGGCCCACCCCATTTGAGAATCACAGGGATTCATCCTCAGAAAGAGGTCTTAGAGCAAATGGCTCACAGATTAACCGAGGAAGCAGAGAAATTGGATATTCCATTTCAGTTCAATCCCATTGTTAGCAAATTAGAGAATCTTGATTTTGAGAAGCTGCGAGTTAAGACTGGGGAAGCTCTAGCAATCAGCTCAGTTCTCCAATTGCATTCCTTTTTGGCCTATGATGATGAATTCCTTAGGAAAAAATCCCCACTAGCATCAAAAAATTCAAATGGGGTTCAATTGCAAAGAGTCCTGCAATTGAACCAAACCACATTAGGTGAATTGCTTGAGAATGATGTGGTTAATCGATATAGCCTTAGTCCTGACTCAGCTTCATCATCACCACCATCTTTCACAGGTTCGCCAAAAATGGATGGCTTTCTTAATGCATTGTGGGGTTTGACACCAAAGCTCATGGTCATAACAGAGCAAGATTCAAACCATAATGGATCTACTCTGATGGAGAGGCTATTAGAATCCTTGTACTTCTATGCAGCATTGTTTGATTGTTTGGAATCTACTCTACCAAGAACATCTATAGAGAGATTGAAGGTGGAGAAGATGCTTTTTGGGGAGGAAATTAAGAACATTATAGCATGTGAGGGAGTCGAGAGGAAGGAGAGACATGAAAAACTTGAGAAGTGGATTCAAAGGCTTGATTCAGCTGGGTTCCAGAGCATGCCTCTCAGCTACTACTGCATGTTGCAGGCAAAGAGGTTGCTGCAAGGTTATGGTTGTGATGGTTATAGGATCAAGGAAGAGAATGGCTGTGCAGTGATTTGCTGTCAAGACAGACCACTCTTTTCGGTATCAGCTTGGAGGAATAGAAAGTGGAGATGA 1425 0.4351 MAPMDERSSSVTSSPLQLFSMMSPSPSLGSPYPWLRELKSEERGLCLIHLLLTCANHVASGSLENVNIALEQISQLASADGDTMQRIAAYFTEALADRILKTWSGLHKALNSTRISFPSEDILVRKLFFELFPFLKMAYVITNHTIIEAMEGEKMVHIIDLNSAEPAQWIALLQALSARPEGPPHLRITGIHPQKEVLEQMAHRLTEEAEKLDIPFQFNPIVSKLENLDFEKLRVKTGEALAISSVLQLHSFLAYDDEFLRKKSPLASKNSNGVQLQRVLQLNQTTLGELLENDVVNRYSLSPDSASSSPPSFTGSPKMDGFLNALWGLTPKLMVITEQDSNHNGSTLMERLLESLYFYAALFDCLESTLPRTSIERLKVEKMLFGEEIKNIIACEGVERKERHEKLEKWIQRLDSAGFQSMPLSYYCMLQAKRLLQGYGCDGYRIKEENGCAVICCQDRPLFSVSAWRNRKWR* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1062 474 Pfam GRAS domain family 47 469 IPR005202 -
Vvi6g1062 474 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 465 IPR005202 -
Vvi6g1062 474 ProSiteProfiles GRAS family profile. 38 469 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1062 Vvi-Chr6 14790169 14794699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1062 5 472 GRAS Transcription Factor Family AT1G50420 69.895 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi6g1062 GRAS 1.5e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1062 - - vvi:100253019 895.96