Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1058 ATGTCGACTGGTGGAAACACACACTGGTGTTATCAATGCAGGCGGAGGGTTCGTCTTCAAGGACGGGACACGGTTTGCTCTTATTGCTATGGAGGCTTTATACAAGAGCTCAATGACCTGGAAGGTTTAGTACCAGAAGCTTTCTTGGGGTCTCAGAACTCAGAAGATAACCATGGCCAGATGTCTTCAATTTTTGATGCTTTTAATGGTCTCGTGAGACAGGGCAATGCTGACCAAAGATTTGGACTTGTGAATGCTGTCAATGATTTTATGAGGCAGAGAATGGCAGGACGAAACCCGAACTTTGATGTTAGAGTGAGATCTGGTTTGGTTCCTGAAGACAACAGCATGAGTGGCTATCGTTCAGGTCCTTGGTTGGTATTCCATGGCCAGATCCCCGTTGAAGCCCTTTTCAGTGGTGGTACAGGCAGGGGAGGTAATGTTGGTGACTTGTTTTTGGGCCCTGGACTGGAAGAACTGATTGAACAACTTACCATGAATGATAGGAGGGGTCCTCCCCCGGCAACTCGTTCTTCCATTGATGCTATGCCCACTATTAAGATCACGCAGAGGCATCTTCGCTCTGACTCACACTGCCCTGTTTGTAAAGATAAGTTTGAGTTGGGTTCTGAAGCAAGGCAGATGCCATGTGACCATATATATCACTCAGACTGTATTGTTCCTTGGTTGGTTCAGCACAACTCATGCCCTGTTTGTCGCCAGGAGCTGCCTCCACAAGTTTCTGGTAATGTTCGTGGTCAACAAAGTTCAAATGGTGGAAACAGGAGCAGCAGGAGTGAGAACAGGAGCAGCAGCAATGGCAGTAGTGCCAGTGGCAGCGAGAATGGTGGGCAGAGTCAGGGAAGGAGGAACCTGTTCTCGTCTTTGTGGCCTTTTGGCTCGTCAAACCCAAATGCTCATCATTATGATGAAACAGGAGGAAGCAGCTCAAGAACCCCCCATGGAGAGAATCATGAGATGGATTACTCTGGATGGCCTTCTGATTACTGA 1011 0.4797 MSTGGNTHWCYQCRRRVRLQGRDTVCSYCYGGFIQELNDLEGLVPEAFLGSQNSEDNHGQMSSIFDAFNGLVRQGNADQRFGLVNAVNDFMRQRMAGRNPNFDVRVRSGLVPEDNSMSGYRSGPWLVFHGQIPVEALFSGGTGRGGNVGDLFLGPGLEELIEQLTMNDRRGPPPATRSSIDAMPTIKITQRHLRSDSHCPVCKDKFELGSEARQMPCDHIYHSDCIVPWLVQHNSCPVCRQELPPQVSGNVRGQQSSNGGNRSSRSENRSSSNGSSASGSENGGQSQGRRNLFSSLWPFGSSNPNAHHYDETGGSSSRTPHGENHEMDYSGWPSDY* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1058 336 MobiDBLite consensus disorder prediction 246 336 - -
Vvi6g1058 336 Pfam Ring finger domain 198 240 IPR001841 -
Vvi6g1058 336 FunFam E3 ubiquitin-protein ligase RING1-like 163 246 - -
Vvi6g1058 336 CDD RING-H2_RNF126-like 199 240 - -
Vvi6g1058 336 ProSiteProfiles Zinc finger RING-type profile. 199 240 IPR001841 -
Vvi6g1058 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 244 - -
Vvi6g1058 336 SMART ring_2 199 239 IPR001841 -
Vvi6g1058 336 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Vvi6g1058 336 SUPERFAMILY RING/U-box 179 246 - -
Vvi6g1058 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 247 IPR013083 -
Vvi6g1058 336 MobiDBLite consensus disorder prediction 247 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1058 Vvi-Chr6 14743126 14744136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1058 145 244 C3H Transcription Factor Family AT5G01980 47.059 7.76e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1058 K11982 - vvi:100251284 662.914