Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi6g1052 | ATGGTTCTTGCTGATCGAGGTGTTCTTTGTGTTGATGAGTCTGACAAGATGAATTTTCAAGATCATGTTGCTATACATGAAGTCATAGAGCAGCAGACAGTTGATATTGCTGGAAACTCTTGGAGTGTTAATTCCTTCTGCTGA | 144 | 0.3958 | MVLADRGVLCVDESDKMNFQDHVAIHEVIEQQTVDIAGNSWSVNSFC* | 48 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi6g1052 | 47 | Gene3D | - | 1 | 47 | IPR027417 | - | |
| Vvi6g1052 | 47 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 1 | 37 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi6g1052 | 47 | ProSiteProfiles | MCM family domain profile. | 1 | 37 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi6g1052 | 47 | FunFam | Uncharacterized protein | 1 | 47 | - | - | |
| Vvi6g1052 | 47 | Pfam | MCM P-loop domain | 1 | 38 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi6g1052 | 1 | 47 | Core DNA Replication Machinery Family | AT5G46280 | 65.306 | 2.06e-15 | 65.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi6g1052 | K02541 | - | han:110937382 | 64.6994 |