Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1044 ATGAGGAAGAAGCTCGACACACGATTCCCTGCCTCCCGTATTAAGAAGATAATGCAAGCTGACGAAGATGTTGGGAAGATTGCTTTGGCTGTGCCTCTCCTAGTTTCTAAAGCTTTGGAACTATTTCTGCAAGATCTTTGTGATCGAACATACCAGATAACACTTGAAAGAGGAGCGAAGACAATGAGTTCTTTGCATTTGAAGCAATGTGTACAGAGATTTAATGTATTTGATTTCCTAAGAGAAATTGTCAGCAAGGTTCCTGATCTAGGTTGTTCTGATGCTGGTGGGGAGGATCGATCTGCCTCCAAAAGAAGGAAAGTTGTTGATGATGAAGGAAATGACAGTGATGAAGAGTCAAAGAGAAGCAGGATGCATGAAACAGGCCACACCGTTGGCAGTGGCAGTGGCAGTGGCAGTGGCAGAGGACGAGGAAGGGGAAGAGGAAGAGGTCGTGGGAGGGGCAGTCGAACAATAGAAAGGGATACCATTGCAGAAAGTGAGAAGCCTGAAGATGACACTGACATGCACACTAACAATGACAATCAGAGCCAAAATCCTGAGACGCGGGATAATGGGGCTGAGCCCGAAGAATCAAAGGAGAATATATCAGTTGTCAAGAATGAATCAAAGGAGAATATATCAGTTGGAAAGAATGCTGATTCATGTGTTCGAAACTTTGACCTGAATGTGGATTTGGATGAGAATGGAGACTCAACATCGATATTGCCAGCTGCCCCTGCCCCTGCCCCTGTTACCCCATCACCAAAACTTACTGAAATGAAGCATGAGGAATACCCTGGGTGGTCCCTCTCTGACATGGAAAAGATGGAGATAGATCCCATTCAACTGGCCAACTTAAATCGAAGAATAGATGAAGATGAGGAAGATTATGATGAAGAATAA 906 0.4448 MRKKLDTRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYQITLERGAKTMSSLHLKQCVQRFNVFDFLREIVSKVPDLGCSDAGGEDRSASKRRKVVDDEGNDSDEESKRSRMHETGHTVGSGSGSGSGRGRGRGRGRGRGRGSRTIERDTIAESEKPEDDTDMHTNNDNQSQNPETRDNGAEPEESKENISVVKNESKENISVGKNADSCVRNFDLNVDLDENGDSTSILPAAPAPAPVTPSPKLTEMKHEEYPGWSLSDMEKMEIDPIQLANLNRRIDEDEEDYDEE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1044 301 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vvi6g1044 301 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Vvi6g1044 301 MobiDBLite consensus disorder prediction 90 223 - -
Vvi6g1044 301 MobiDBLite consensus disorder prediction 153 178 - -
Vvi6g1044 301 MobiDBLite consensus disorder prediction 191 207 - -
Vvi6g1044 301 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 128 - -
Vvi6g1044 301 Coils Coil 284 301 - -
Vvi6g1044 301 MobiDBLite consensus disorder prediction 98 128 - -
Vvi6g1044 301 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vvi6g1044 301 MobiDBLite consensus disorder prediction 235 260 - -
Vvi6g1044 301 FunFam dr1-associated corepressor homolog 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1044 Vvi-Chr6 14421551 14429620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1044 1 291 CCAAT-HAP5 Transcription Factor Family AT3G12480 47.573 1.75e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vvi6g1044 CBFD_NFYB_HMF 1.6e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1044 K21752 - vvi:100253016 531.176