Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1041 ATGGCTTCCAGAGTTGTTCCTGTTCCAAACCAACCAAGAGGAGGAAAGCAGAAGAATGCCCCAGAAAAGGCTAGAAACCGGCAAGCTCTCAGAGAAATCGGAAATCTTATGAATGATACTATTCCAGCAGGGGAAGGGACATTCAATCCACAGATTTCTCGCCCCCTTACAAGGAGCTTTTGTGCACAATTACCGGAAAATGGGAGAGCACAGAAACCCATTGCAGAAGTTGTTTCTGTTCATGGATTTGCCCCTGGAAAAGCTCGAAAGAAGCCGAAACCTCAGACTGTGGTGACCATTAGCCCAGATGAAAATGATAAGAGTAAACCTTCAACACAAGGGTCCTTAACTAAGAAGGTCAAGACCCTCTCTTCAATCCTCACTACTCAAAGCAAGATGGCTGCATGTCGACTCACTGATAGGCCGAGGGTTCCAATAATAAACATTGATGCAGACGATGTTGATAATGAACTTGCTGCTGTTGAATATGTTGATGACATCTATCAGTTCTACAAGATGACAGAAGATGAGAATCGAACGATACATTATATGGATTTGCAGACCGATATTAATTCCAAGATGAGAGCAATCCTAATAGATTGGCTGGTAGAAGTTCATAGAAAGCTTGAACTTATGCCTGAAACGCTTTATCTTACCATAAACATTATTGATCGATACCTGTCGACAAAAATTGTATCTAGGAGCGAGCTTCAGTTAGTTGGCATCACTTCAATGCTGATTGCTTGCAAATATGAAGAAATTTGGGCACCAGAGGTGGTGTTCTTCCCTTCTGGTGTTGTGTCATGTCATCATTTGTTGAAAGCTCCTACAGCTTCTCTAATATGGGTTTTTGGAATTCATTTTCAGGTGAATGACTTTGTGTGCATATCAGATAATGCCTATGCCAGGGAACAGATACTCCAAATGGAGAAATCAATCTTGACAAAGTTGGAATGGTACTTAACAGTTCCTACACCATATGTCTTCCTAGTTCGGTACATCAAAGCTTCTGTTGCACCGGATCAAGAGATGGAAGAGATGGTGTTTTTCCTAACTGAACTGGGTCTGATGAACTATTCTACAATATTGTACTCCCCATCGATGCTTGCTGCTTCAGCAGTATATGCGGCTCGTTGCACCCTCCGCAGGATCCCTCTCTGGAGTGCAACTCTAAAGCACTACACGGGCTACACTCAAGACCAACTAATGGACTGTGCGAAGCTCCTGGTTAGCTTTCACTTGGGAGCTGCAGAGAACAAGCTCAAAGCAGTCTATCAGAAATTTTCAGAACTTGAAAGGGGTGCCGTTGCCCATGTCTCTCCTGCCAAAAATCTTTCAGCTGGCGCCTAG 1350 0.4341 MASRVVPVPNQPRGGKQKNAPEKARNRQALREIGNLMNDTIPAGEGTFNPQISRPLTRSFCAQLPENGRAQKPIAEVVSVHGFAPGKARKKPKPQTVVTISPDENDKSKPSTQGSLTKKVKTLSSILTTQSKMAACRLTDRPRVPIINIDADDVDNELAAVEYVDDIYQFYKMTEDENRTIHYMDLQTDINSKMRAILIDWLVEVHRKLELMPETLYLTINIIDRYLSTKIVSRSELQLVGITSMLIACKYEEIWAPEVVFFPSGVVSCHHLLKAPTASLIWVFGIHFQVNDFVCISDNAYAREQILQMEKSILTKLEWYLTVPTPYVFLVRYIKASVAPDQEMEEMVFFLTELGLMNYSTILYSPSMLAASAVYAARCTLRRIPLWSATLKHYTGYTQDQLMDCAKLLVSFHLGAAENKLKAVYQKFSELERGAVAHVSPAKNLSAGA* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1041 449 Gene3D - 166 179 - -
Vvi6g1041 449 ProSitePatterns Cyclins signature. 195 226 IPR006671 -
Vvi6g1041 449 CDD CYCLIN_AtCycB-like_rpt2 324 441 - -
Vvi6g1041 449 PIRSF Cyclin_A_B_D_E 4 263 IPR046965 GO:0016538|GO:0044772
Vvi6g1041 449 PIRSF Cyclin_A_B_D_E 288 449 IPR046965 GO:0016538|GO:0044772
Vvi6g1041 449 Gene3D - 316 448 - -
Vvi6g1041 449 SMART cyclin_7 328 411 IPR013763 -
Vvi6g1041 449 SMART cyclin_7 200 315 IPR013763 -
Vvi6g1041 449 Pfam Cyclin, N-terminal domain 289 321 IPR006671 -
Vvi6g1041 449 Pfam Cyclin, N-terminal domain 166 259 IPR006671 -
Vvi6g1041 449 SUPERFAMILY Cyclin-like 155 321 IPR036915 -
Vvi6g1041 449 Pfam Cyclin, C-terminal domain 324 440 IPR004367 -
Vvi6g1041 449 Gene3D - 180 262 - -
Vvi6g1041 449 MobiDBLite consensus disorder prediction 98 117 - -
Vvi6g1041 449 FunFam G2/mitotic-specific cyclin 179 273 - -
Vvi6g1041 449 MobiDBLite consensus disorder prediction 85 117 - -
Vvi6g1041 449 SUPERFAMILY Cyclin-like 325 444 IPR036915 -
Vvi6g1041 449 Gene3D - 285 315 - -
Vvi6g1041 449 MobiDBLite consensus disorder prediction 1 28 - -
Vvi6g1041 449 PANTHER CYCLINS 122 429 IPR039361 -
Vvi6g1041 449 SMART Cyclin_C_2 324 442 IPR004367 -
Vvi6g1041 449 FunFam G2/mitotic-specific cyclin-1 312 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1041 Vvi-Chr6 14388028 14390161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1041 66 437 Core Cell Cycle Gene Families AT2G26760 51.181 4.55e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1041 K21777 - vvi:100254743 812.757