Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1029 ATGGCCAAAGTGTTTCTTCATTATGAACCCTCAACACCTATGGAAATTTATAGGTTCCTTTTCAATTTGGCTAAGATTGGACGTTACCAATTTACATCACTGCAGGCTCAGTTGATGACAAAAATTCATCACAGGAACTTGGTTCCCCTCATTGGATACTGCAATGAAAGACAACACTTGGGGCTTGTATACGAGTATATGACTAATGGAAACTTGCAAGTGTATTTGTCAACTACAAATACTGCTGTCTTGAGTTGGGATCACAGACTTCAAATAGTAGTTGATACAGCACAACCATTAGAGTATTCACATAATGGTTGCAAGCTACCTATAATCCACAAAGATGTCAAGACTTCCAACATTTTGCTGGATGAGAAACTGCAAGCAAAAGTTATTGATTTCAGGTTGTCCAGAATCATGTCAGATGAACATGGCAGCCATGCATCAACTGCAGTTGTAGGCAGGGTCGGGTACCTCGATCCTGAGTATTTCAGATTGAATAAATTGAATAAGAAATGGACTGATCAGAGAGAGGTGGCGTGGATCAAAGGAGAGAGATGTATCAGTGACTGTCCATCGTAA 582 0.4003 MAKVFLHYEPSTPMEIYRFLFNLAKIGRYQFTSLQAQLMTKIHHRNLVPLIGYCNERQHLGLVYEYMTNGNLQVYLSTTNTAVLSWDHRLQIVVDTAQPLEYSHNGCKLPIIHKDVKTSNILLDEKLQAKVIDFRLSRIMSDEHGSHASTAVVGRVGYLDPEYFRLNKLNKKWTDQREVAWIKGERCISDCPS* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1029 193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 111 123 IPR008271 GO:0004672|GO:0006468
Vvi6g1029 193 PANTHER OS07G0107800 PROTEIN-RELATED 33 172 - -
Vvi6g1029 193 Gene3D Phosphorylase Kinase; domain 1 21 67 - -
Vvi6g1029 193 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1029 193 FunFam Os07g0541700 protein 67 155 - -
Vvi6g1029 193 Pfam Protein tyrosine and serine/threonine kinase 33 171 IPR001245 GO:0004672|GO:0006468
Vvi6g1029 193 SMART serkin_6 20 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1029 193 Gene3D Transferase(Phosphotransferase) domain 1 68 175 - -
Vvi6g1029 193 SUPERFAMILY Protein kinase-like (PK-like) 31 171 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1029 Vvi-Chr6 14200246 14200827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1029 34 172 Receptor kinase-like Gene Family AT4G29180 52.518 1.66e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi6g1029 PK_Tyr_Ser-Thr 2.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1029 - - hbr:110649808 187.193