Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1013 ATGGGGAATTGCTGCAGAAGACCTGCTAAATGTGCCCATGCTTCTTCGACTCACTTTTCTGTCCAGTCTGATCGTACAAAGCCTCCCAGTAAGGCAAATAAGGATTCAACTTCTTCCAGCCAGCATACACCTTTTGGAACCTTGAACAAAATTTTGGTATCATCCAAAAGTGATATATCTGCCTCCAATAGTGTCAAGGACTTTAGCTTCAATGATCTCAAGAATGCCTCCAAGAACTTCCGCTCAGAAAGCCTTCTTGGTGAGGGAGGATTTGGGTGTGTTTTCAAAGGCTGGCTTGATGAGAACACTTTAGCTCCCACCAAACCTGGGACGGGGATGGTAGTGGCCATCAAGAAACTCAAGACAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCGGAAGTAAACTACTTAGGTCAGCTTCACCATGAAAATCTCGTGAAACTCATCGGGTATTGCTCAGAGTCTGAGAATAGACTTCTGGTATATGAGTTTATGTCAAAGGGAAGTTTGGAAAATCATTTATTCAAAAAAGGTGTTCAACCAATAACTTGGGCTACACGGATGAGTATCGCTATTGATGTTGCACAAGGAATATCCTTCTTACATAGTTTAGATGCTAACGTAATCTACCGTGATTTAAAAGCTTCCAACATTCTGCTTGATTCGGATTTTAAAGCAAAGCTTTCAGATTTTGGCTTAGCAAGGGATGGTCCTACTGGAGATAACACTCATGTTTCAACCAGAGTTGTGGGAACTCGGGGTTATGCTGCCCCTGAATATGTTGCAACAGGTCATTTAACCCCAAAGAGTGATGTATATAGCTTTGGGGTAGTCTTGTTAGAGCTGCTATCAGGTAGAAGAGCAATGGATGATGAGAAGGCTGGGGGTGTTGAAGAAACTCTAGTAGACTGGGCAAAACCTTTTCTTAGTGACAACAGGCGAGTTCTGAGAATCATGGATACTCGGTTGGGTGGTCAGTACTCGAAGAAAGGAGCTCAAGCTGCAGCATCACTTGCATTGCAGTGCCTCCACACAGACCCCAAAAACCGGCCACTTATGACAGATGTTCTAGCCGCACTGGAGCGACTTCCCACATCAAAGGACATTCCTAGGACCCCATCGCCTAGGGTAGAATATCACATTATGAAGCATTCATCAAATCCCGGTCACACTCACAAGGCAACAGCCGGAGCCACAAACTTGGTATGA 1212 0.4455 MGNCCRRPAKCAHASSTHFSVQSDRTKPPSKANKDSTSSSQHTPFGTLNKILVSSKSDISASNSVKDFSFNDLKNASKNFRSESLLGEGGFGCVFKGWLDENTLAPTKPGTGMVVAIKKLKTESFQGHKEWLAEVNYLGQLHHENLVKLIGYCSESENRLLVYEFMSKGSLENHLFKKGVQPITWATRMSIAIDVAQGISFLHSLDANVIYRDLKASNILLDSDFKAKLSDFGLARDGPTGDNTHVSTRVVGTRGYAAPEYVATGHLTPKSDVYSFGVVLLELLSGRRAMDDEKAGGVEETLVDWAKPFLSDNRRVLRIMDTRLGGQYSKKGAQAAASLALQCLHTDPKNRPLMTDVLAALERLPTSKDIPRTPSPRVEYHIMKHSSNPGHTHKATAGATNLV* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1013 403 SMART serkin_6 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1013 403 CDD STKc_IRAK 86 364 - -
Vvi6g1013 403 Gene3D Transferase(Phosphotransferase) domain 1 166 375 - -
Vvi6g1013 403 MobiDBLite consensus disorder prediction 12 43 - -
Vvi6g1013 403 FunFam Serine/threonine-protein kinase BIK1 48 165 - -
Vvi6g1013 403 MobiDBLite consensus disorder prediction 389 403 - -
Vvi6g1013 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Vvi6g1013 403 MobiDBLite consensus disorder prediction 384 403 - -
Vvi6g1013 403 Pfam Protein tyrosine and serine/threonine kinase 83 360 IPR001245 GO:0004672|GO:0006468
Vvi6g1013 403 PANTHER OS01G0588500 PROTEIN-RELATED 37 364 - -
Vvi6g1013 403 ProSiteProfiles Protein kinase domain profile. 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1013 403 ProSitePatterns Protein kinases ATP-binding region signature. 86 119 IPR017441 GO:0005524
Vvi6g1013 403 Gene3D Phosphorylase Kinase; domain 1 54 165 - -
Vvi6g1013 403 FunFam PTI1-like tyrosine-protein kinase 3 166 372 - -
Vvi6g1013 403 MobiDBLite consensus disorder prediction 15 43 - -
Vvi6g1013 403 SUPERFAMILY Protein kinase-like (PK-like) 59 374 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1013 Vvi-Chr6 13866909 13870715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1013 34 369 Glycoside Hydrolase AT3G07070 47.801 4.56e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi6g1013 PK_Tyr_Ser-Thr 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1013 - - vvi:100241109 801.201