Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1012 ATGGCTATAGCAGCCCCTGGGCAGCTTAATATTAGCGAGTCTCCATCTTGGGGGTCCAGAAGTGTGGATTGTTTTGAGAAATTGGAACAGATTGGTGAAGGCACATATGGTCAAGTGTACATGGCTAGAGAAATCAAAACAGGGGAAATTGTTGCTTTGAAGAAAATACGAATGGACAATGAAAGAGAGGGGTTCCCTATAACCGCCATTCGTGAAATTAAAATTCTAAAGAAGTTGCATCATGAAAATGTGATCAAGTTGAAAGAGATTGTAACTTCTCCAGGTCCTGAGAAGGATGACCAAGGGAGGCCAGATGGTAATAAGTACAAAGGAGGCATCTACATGGTTTTTGAATACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCTGGGATGAGATTTTCAGTCCCTCAGATAAAGTGTTATATGAGGCAGCTTTTGACGGGGCTTCACTACTGTCATGTAAATCAAGTTCTTCATCGGGATATCAAAGGCTCTAATCTTCTAATAGACAATGAGGGAAATTTGAAGCTTGCAGATTTTGGCCTTGCCCGGTCATTTTCAAATGATCACAATGGGAATCTTACAAATCGTGTTATTACCTTATGGTACAGACCGCCAGAGTTGCTGCTTGGGACCACAAGGTATGGTCCAGCTGTTGATATGTGGTCAGTTGGCTGTATCTTTGCAGAACTTCTGCATGGAAAACCTATCTTTCCTGGAAAAGATGAGCCTGAACAATTAAATAAGATCTTTGAGCTTTGTGGAGCTCCAGATGAAGTCAACTGGCCTGGGGTTTCCAAGATTCCTTGGTATAGCAATTTCAAGCCAACAAGGCCAATGAAGAGACGTCTTAGGGAGGTTTTTAGACACTTTGATCGGCATGCTTTGGAGTTATTGGAGAGGATGCTGACTCTTGATCCATCTCAGAGAATATCTGCCAAGGATGCACTTGATGCTGAGTATTTCTGGACTGACCCTTTGCCTTGTGATCCCAAGAGTTTACCAAAATATGAATCTTCCCATGAGTTCCAGACAAAGAAGAAGCGCCAGCAACAACGTCAACATGATGAGACAGCGAAACGTCAGAAGCTTCAGCATCCACAACAGCATGCCCGTCTTCCACCCATTCAGCAGTCCGGGCAAGTACATGCACAGATGCGGGCAGGACCTAACCAGCCCATGCATGGTGGTTCTCAACCCCCAGTGGCTGCAGGGCCCAGCCACCATTATGGGAAGCCCCGTGGACCCTCTGGAGGGCCAAGCAGGTACCCTCAGAGTGGAAACCCCAGCGGAGGATACAATCACCCAAACCGTGGAGGTCAAGGTGGTGGTGGTGGTTACGGCAATGGACCATTTCCACCTCAAGGGAGGGGTCCACCATATGCCTCAAGCGGAATGCCTGGTGCAGGTCCTCGAGGAGGTGGCAGTGGTTATGGAGTTGGTGCTCCAAATTATCCTCAAGGTGGTCCATACAGTGGTTCAGGTGCTGGTCGCGGCTCAAACATGATGGGTGGGAACCGCAATCAAAATTATGGTTGGCAACAATAA 1554 0.4691 MAIAAPGQLNISESPSWGSRSVDCFEKLEQIGEGTYGQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDDQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNGNLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYSNFKPTRPMKRRLREVFRHFDRHALELLERMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHDETAKRQKLQHPQQHARLPPIQQSGQVHAQMRAGPNQPMHGGSQPPVAAGPSHHYGKPRGPSGGPSRYPQSGNPSGGYNHPNRGGQGGGGGYGNGPFPPQGRGPPYASSGMPGAGPRGGGSGYGVGAPNYPQGGPYSGSGAGRGSNMMGGNRNQNYGWQQ* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1012 517 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Vvi6g1012 517 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Vvi6g1012 517 FunFam Cyclin-dependent kinase C-2 12 121 - -
Vvi6g1012 517 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1012 517 CDD STKc_CDK9_like 25 324 - -
Vvi6g1012 517 MobiDBLite consensus disorder prediction 501 517 - -
Vvi6g1012 517 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1012 517 MobiDBLite consensus disorder prediction 335 517 - -
Vvi6g1012 517 MobiDBLite consensus disorder prediction 373 388 - -
Vvi6g1012 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Vvi6g1012 517 FunFam Cyclin-dependent kinase C-2 122 364 - -
Vvi6g1012 517 MobiDBLite consensus disorder prediction 423 437 - -
Vvi6g1012 517 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1012 517 PANTHER CELL DIVISION PROTEIN KINASE 23 330 - -
Vvi6g1012 517 MobiDBLite consensus disorder prediction 337 366 - -
Vvi6g1012 517 SUPERFAMILY Protein kinase-like (PK-like) 19 332 IPR011009 -
Vvi6g1012 517 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1012 Vvi-Chr6 13834044 13857601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1012 1 517 Core Cell Cycle Gene Families AT5G10270 77.438 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vvi6g1012 Pkinase 1.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1012 K08819 - vvi:100263383 974.156