Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1011 ATGGAGATTCAGACAATGGGTTCTCAAGTGGGTGGTCAATTGGTAAGGCAAAGCTCATGGTATAGCCTCACCCTAGATGAAGTTGAGAATCAATTGGGAGACTTAGGCAAACCATTGGGCAGCATGAATGTTGACGAGCTTCTTAAAAATGTGTGGATGGCCGAAGCAAATCAATGTGTTAGTGCGGACATTGATAATGCTTCTTCAAAGATTTCTCTGCAACGACAGGCTAGCCTAACGATAGCTCAGGCATTGAGTGAGAAGACTGTGGAAGAGGTGTGGAGTGATATCCAACAAGGAGAGAAGAAGAAATGTGGTGATGACATCAAAGGTCAGGTGAGAGAGCCTACTCTTGGTGAAATGAAGTTGGAGGACTTCTTGGTCAAAGCGGCAGTTTTTGTGAAAGGGTTGGATATAGTCGGTGTGGTGACCCCACCGAATTTTCCACAGCAAATGGGCTTGTCACCTTCCCCTTCTGTTGGCACATTATCAGACACATCAATTCCAGGGCATGAAAGGGATGCTTCGATGGAAAAGACTGTTGAAAGGCGGCTAAAGAGAAAGATTAAGAACCGAGAATCTGCTGCACGGTCACGAGCCAGAAAACAGGCTTATCATAATGAGCTAGTTAGTAAGGTTTCACGATTAGAGGAAGAGAATGTAAGGCTCAAGAAAGAGAAGGAAGTGGAGAAAATGTTTCCATGTGAATCATCGACAGAACCAAAGTACCAGCTTCGGAGGACAAGTTCAGTTACTTTCTAA 762 0.4449 MEIQTMGSQVGGQLVRQSSWYSLTLDEVENQLGDLGKPLGSMNVDELLKNVWMAEANQCVSADIDNASSKISLQRQASLTIAQALSEKTVEEVWSDIQQGEKKKCGDDIKGQVREPTLGEMKLEDFLVKAAVFVKGLDIVGVVTPPNFPQQMGLSPSPSVGTLSDTSIPGHERDASMEKTVERRLKRKIKNRESAARSRARKQAYHNELVSKVSRLEEENVRLKKEKEVEKMFPCESSTEPKYQLRRTSSVTF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1011 253 SMART brlzneu 179 251 IPR004827 GO:0003700|GO:0006355
Vvi6g1011 253 SUPERFAMILY Leucine zipper domain 183 228 IPR046347 GO:0003700|GO:0006355
Vvi6g1011 253 Pfam bZIP transcription factor 183 227 IPR004827 GO:0003700|GO:0006355
Vvi6g1011 253 Gene3D - 181 234 - -
Vvi6g1011 253 Coils Coil 206 226 - -
Vvi6g1011 253 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 15 251 IPR043452 GO:0003700|GO:0045893
Vvi6g1011 253 MobiDBLite consensus disorder prediction 151 166 - -
Vvi6g1011 253 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 181 233 - -
Vvi6g1011 253 MobiDBLite consensus disorder prediction 151 179 - -
Vvi6g1011 253 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700|GO:0006355
Vvi6g1011 253 CDD bZIP_plant_BZIP46 183 228 - -
Vvi6g1011 253 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 226 IPR004827 GO:0003700|GO:0006355
Vvi6g1011 253 MobiDBLite consensus disorder prediction 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1011 Vvi-Chr6 13809871 13815527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1011 14 253 bZIP Transcription Factor Family AT3G56850 50.000 5.36e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi6g1011 bZIP_1 1.5e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1011 K14432 - vvi:100254738 495.738