Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1005 ATGCACAAGGGTATGGATTTGTCGACGCTCCAATCTAGGGCATCCTCTGCCTACATTCCACCCCACCGTACGCAGCTCCATCCCCGCTTGTATTCAATCCCAACCCCCAAACCCTCATCATCCTTATCACAGCACTCCCGCGACAAGTGGCTCATCATCGCTGCCTTCGTCCTTACCATCCCTTTCCTATTCTACCTCTTCTCCCTCGCCCAAGGCCTCCACCGCTCCTCTAAATTCACCAATCCTAACCCCGGCCCTATCCTCTTTGGTCTCGTCCTCCACGCCTCCCCCTCCGCCTGCCGAATCCGCGTCTTCCACTCCCTCAATGACGCTCCCATTCCCTTCATTGCTTCCAATTTCAACTCCAATTCTCTCAAGCTCCGCCCCGGTCTCCCCGATGATCCTGGGGCTGCTGGGCCCTCTATTTTGGGGTTGATTGAGTTTGCACAGCGGAGGGTGCCGAGATCCACGTGGAGCAGCACCAAGGTGCAGCTGGAGTTGGAGGGTCTGGGCGCGGAGTTGACAGAGGCCGCCTTGGAGTCGTGCCGCAGAGTCTTGAGGTCGTCCGGGTTTTTGTTCAGGGACGAGTGGGCGCGCGTCATGAAAGGTCAAGAAGAAGGAGTTTATTCTTGGGTTGCTGTAAATTATGCTCTTGGAAGCTTGGGAAGTGAGCCTCAGGAAACCACTGGGATAGTTGAACTCGGTGGGGCTTCTATGCAGATTGCATTTGCTTCAAGAGAAACGACACCAATGCAATTTTTGCGAGTTATCAAGTTAGCTGGAGTAACATACAATCTACATACTCGAAGCTTAACTCAATTTGGTCAGAATGCAGTTTGGGAGTCACTTGTTGAGCTGAAAAATTCTAGAGCTTCAAGTTCTAAAGAGGGGATTGTAAACAATCCTTGCATTACCAGAGGGTATGATTTGATGCCAGATGCAAGTGGCACAAAACTTCTTACATCCCATCCTGCTGGGAACTTTTCCTCTTGCAGATTGGAAACATTGGCATTGTTAAAGAGAAGAAAAGATAAATGCTTACATCCTCCTTGTAAAATCATGTCATCTTTATTTGTTGAGTCACAAGGCAAGCCTGTTCCTCCAGAAAACTTCTTTTATACTTCTGAGTTTTTTGGGTTGGTTCCCAAGGCTTCTTTGTCTGAATTGGAAGTGGCTGGACAGCATTACTGTGAAGATGATTGGGATACACTGAAGAGGCAACATTCTGAAGTTGATGATTTGGATTTGTTGAGACATTGTTTCTCTTCAGCTTATACTGTGGCATTGTTGCACGATGCTCTTGGAATCCCCATGAATGATACAAGGATTGGATTTGGAAATCACACAGGAGGCATTCCCCTTGACTGGATGTTGGGAGCTTTCATCCTCCAGACAATGCTGGAGCCCCTGGAGCTGGAAACAGATAGCCTGGTCCAGATTGTTGGGAATGAGTCAGTCACATACTTCTCATTGTTTGCCTTTCTTTTAATAGCTGTGCTTGCTGCATTCTTTGTACTAAAATGGCGAAAACCACAATTAAAGACAATATACGACCTAGAGAAGGGACGCTATATTGTTACCCATGTACCCAGTATCCTATTAGTGATTAGCAGCCTTAGGTTCCCATGCCCAACATATATATAA 1644 0.4757 MHKGMDLSTLQSRASSAYIPPHRTQLHPRLYSIPTPKPSSSLSQHSRDKWLIIAAFVLTIPFLFYLFSLAQGLHRSSKFTNPNPGPILFGLVLHASPSACRIRVFHSLNDAPIPFIASNFNSNSLKLRPGLPDDPGAAGPSILGLIEFAQRRVPRSTWSSTKVQLELEGLGAELTEAALESCRRVLRSSGFLFRDEWARVMKGQEEGVYSWVAVNYALGSLGSEPQETTGIVELGGASMQIAFASRETTPMQFLRVIKLAGVTYNLHTRSLTQFGQNAVWESLVELKNSRASSSKEGIVNNPCITRGYDLMPDASGTKLLTSHPAGNFSSCRLETLALLKRRKDKCLHPPCKIMSSLFVESQGKPVPPENFFYTSEFFGLVPKASLSELEVAGQHYCEDDWDTLKRQHSEVDDLDLLRHCFSSAYTVALLHDALGIPMNDTRIGFGNHTGGIPLDWMLGAFILQTMLEPLELETDSLVQIVGNESVTYFSLFAFLLIAVLAAFFVLKWRKPQLKTIYDLEKGRYIVTHVPSILLVISSLRFPCPTYI* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1005 547 Gene3D - 90 460 - -
Vvi6g1005 547 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 201 216 IPR000407 GO:0016787
Vvi6g1005 547 Gene3D Exopolyphosphatase. Domain 2 202 452 - -
Vvi6g1005 547 Pfam GDA1/CD39 (nucleoside phosphatase) family 89 468 IPR000407 GO:0016787
Vvi6g1005 547 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 51 467 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1005 Vvi-Chr6 13703162 13724169 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1005 85 462 Calmodulin-binding Proteins AT3G04080 26.506 1.26e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1005 K01510 - vvi:100256492 1029.24