Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0999 ATGGAATTAGTGGCTTCACTGTTGGGTTCAGTGGTAGCAGACGCTGGCAAACATCTATGTGGTTGCATATGTTCTAAAGCTAGTAATTCTCTCAGATTTCAAGCAGGTTTCAATGATCTGGAAGAAGAGATGAAGCTTTTAATAGATCTGAGAAGCAAAGTGGAGAATGAGTCAGCTTGGACCCCCCAAGTAAGTGAGTGGCTCAAGGAGGTTGAAGAACTGGAGTGTGAAGTGAATTCTATGCAAGAAGGTATAGCAGCCAGCAACGAGAGATCCGGCAGAGGTTTCTTAAATTGCAGCCTGCATAACAAAGAACTGGTACAAAGGCTGAAGAAGGTGCAAAGACTTCGCAAAGTGGGCACCAGCATCAGCATGGTGGCTGCTCATCGTCTAGCCAGAAGAGTGGAGCATATTCCAGGGCCATCAATTGAGTGTCAAGCAACAGCAACACAAAATTTAGCTAAAATCATGAGTCTTCTGAATGATGATGGAGTTGGGAGAATCGGTGTTTGGGGCATGGGCGGAGTAGGCAAAACTACTCTGGTAAAGAACCTGAACAACAAGCTCCGGGATGCTTCTTCAACACAATCTTTTGGCATTGTGATATGGATTACAGTATCCAAGGAAATGGACTTGAAAAGAATCCAAGTACAAATTGCTCAGAGATTGAATATGGCTGTGGATATGGATGAAACCACTGAGAGGATGGCTATTAAATTGTTTCACAGACTGAAGAAGGAAAATAAGTTTCTCCTCATTTTTGATGACGTGTGGAAGGGAATTCATTTAGACTCCTTGGGTGTGCCCCAGCCTGAAGATCATGTGGGTTGCAAGATCGTATTAACGACTCGATCTTTGGATGTTTGTAGGGTGATGAGGACTGATGTGGATGTCAGAGTGGATGTTCTAAATGACAGTGAAGCTTGGAATTTGTTTTGTCAAAACGTGGGGGATGTAGCCTCCTTACAACATATTAAACCATTAGCAGAGGCAGTTGCTAAAGAATGTGGAGGATTGCCCTTGGCGATAATCGTCATGGGGACGTCTATGAGGGGAAAGACAATGGTGGAGCTTTGGGAGGATGCCTTGAATGAGCTGCAACAATCACTGCCCTGTAATATCCAAGGGATAGAGGATGAGGTCTATAAGCCCTTAAAGTGGAGCTATGATTTATTACAAGGTAAGAATATCAAGTCATGCTTCCTGTATTGTTCTTTATTTCCTGAGGATTTCTCCATTGAAATAAGTGAACTAGTACAATGCTGGCTGGCCGAAGGTCTCTTAGATTCACAGCAAAACTATAGGGATGCACAGAATAGGGCACTTGCTTTGATTGAAAATCTAAAGAACTGTTGCTTGTTGGAACCTGGTGACTCTACTGGCACTGTGAAAATGCATGATGTAGTCCGCGATGTTGCCATATGGATTTCTTCCTCTCTGAGCGATGGATGTAAATTCCTAGTTCGATCAGGGATTAGATTGACTGAGATTCCCATGGTTGAATTGTCAAATTCTCTCAAGAGAGTTTCATTCATGAATAATGTGATAACAGAGCTACCAGCTGGTGGGATAGAGTGCCTAGAGGCATCAACTTTATTTCTACAAGGTAATCAGACCCTTGTGATGATTCCTGAGGGATTCCTGGTTGGATTTCAACAACTGAGAGTTTTGAATCTGTGTGGAACTCAGATCCAGAGATTGCCTTCTTCCCTTCTCCATCTTAGTGAGCTACGCGCTCTCCTCTTAAAGGATTGCACTTGTCTTGAAGAATTGCCTCCACTAGGGGGGCTTAGTCAACTGCAGTTGCTCGACTGTGATTCCACTGCTATCAAGGAATTGCCTCAAGGGATGGAGCAATTGAGCAACTTGAGGGAGCTGAACCTGTCACGCACTAAGCAGTTGAAAACATTTCGAGCTGGAGTAGTATCTAGGCTGCCTGCTTTAGAGGTTCTCAACATGACAGATACCGAATACAAATGGGGAGTGATGGGAAATGTAGAAGAGGGAGAAGCATCTTTTGATGAGCTAGGAAGTCTCAGGCAATTAACATACTTATACATTAACTTGAAAGGCATTTCACCCCCAACCTTCGAGTATGACACGTGGATAAGCAGATTGAAAAGCTTCAAAATCCTTGTGGGCTCAACTACTCATTTCATATTCCAAGAACGAGAGTTCAAGAAAACACATGTGATCATCTGTGATGTTGATCTCTCAGAACAATGTATTGGGTGGTTGTTGACGAATTCAAGCTCCTTACTTTTGGGTTTCTGCAGTGGACAGAAGCAGATGCTTGAAAACTTAGCCTTAAATAATGTTTCCTTTGCTTGTTTGACAAAGCTTACTATTACCAATTCTGACTGCTGCTTAAGGCCAGAGAACGGTTCTGTTGCCCAAAATAACCTACTCCCAAGTCTGGAGGAGCTTTATCTTCGTCATCTCACACATCTAGAGAACGTCTCGGACTTAGTTTCTCATCTGGGACTAAGACTATCAAAGCTAAGAGTAATGGAGGTGCTGTCTTGTCCCAGATTAAAGTATCTTCTATCATTTGATGGTGTGGTTGATATAACCTTAGAAAACCTGGAAGATATCAGATTAAGTGACTGTGTTGATCTGGGTGATCTCTTTGTATACGATTCAGGGCAGCTGAACTCAGTTCAAGGACCTGTTGTTCCAAACCTACAGAGAATATACTTGCGTAAACTTCCCACATTGAAGGCTTTAAGCAAAGAAGAGGAGTCATGGCCGAGCATAGAGGAACTTACAGTGAATGACTGTGATCATCTCAAAAGGCTGCCCCTGAATCGCCAAAGTGTAAATATCATAAAGAAAATAAGAGGAGAACTGGAGTGGTGGAGGCGATTGGAGTGGGGTGATGAGGAAATGAGGTCAAGTCTGCAGCCTTTTTTCCTCGAATGTACTTTCGGAAAACAAACACCAAGATAG 2949 0.43 MELVASLLGSVVADAGKHLCGCICSKASNSLRFQAGFNDLEEEMKLLIDLRSKVENESAWTPQVSEWLKEVEELECEVNSMQEGIAASNERSGRGFLNCSLHNKELVQRLKKVQRLRKVGTSISMVAAHRLARRVEHIPGPSIECQATATQNLAKIMSLLNDDGVGRIGVWGMGGVGKTTLVKNLNNKLRDASSTQSFGIVIWITVSKEMDLKRIQVQIAQRLNMAVDMDETTERMAIKLFHRLKKENKFLLIFDDVWKGIHLDSLGVPQPEDHVGCKIVLTTRSLDVCRVMRTDVDVRVDVLNDSEAWNLFCQNVGDVASLQHIKPLAEAVAKECGGLPLAIIVMGTSMRGKTMVELWEDALNELQQSLPCNIQGIEDEVYKPLKWSYDLLQGKNIKSCFLYCSLFPEDFSIEISELVQCWLAEGLLDSQQNYRDAQNRALALIENLKNCCLLEPGDSTGTVKMHDVVRDVAIWISSSLSDGCKFLVRSGIRLTEIPMVELSNSLKRVSFMNNVITELPAGGIECLEASTLFLQGNQTLVMIPEGFLVGFQQLRVLNLCGTQIQRLPSSLLHLSELRALLLKDCTCLEELPPLGGLSQLQLLDCDSTAIKELPQGMEQLSNLRELNLSRTKQLKTFRAGVVSRLPALEVLNMTDTEYKWGVMGNVEEGEASFDELGSLRQLTYLYINLKGISPPTFEYDTWISRLKSFKILVGSTTHFIFQEREFKKTHVIICDVDLSEQCIGWLLTNSSSLLLGFCSGQKQMLENLALNNVSFACLTKLTITNSDCCLRPENGSVAQNNLLPSLEELYLRHLTHLENVSDLVSHLGLRLSKLRVMEVLSCPRLKYLLSFDGVVDITLENLEDIRLSDCVDLGDLFVYDSGQLNSVQGPVVPNLQRIYLRKLPTLKALSKEEESWPSIEELTVNDCDHLKRLPLNRQSVNIIKKIRGELEWWRRLEWGDEEMRSSLQPFFLECTFGKQTPR* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0999 982 Gene3D - 131 300 IPR027417 -
Vvi6g0999 982 Coils Coil 64 91 - -
Vvi6g0999 982 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 20 934 - -
Vvi6g0999 982 FunFam Probable disease resistance protein At5g66910 302 388 - -
Vvi6g0999 982 Coils Coil 37 57 - -
Vvi6g0999 982 Gene3D - 302 388 IPR042197 -
Vvi6g0999 982 SMART AAA_5 164 304 IPR003593 GO:0016887
Vvi6g0999 982 Gene3D Ribonuclease Inhibitor 476 728 IPR032675 -
Vvi6g0999 982 SUPERFAMILY L domain-like 461 940 - -
Vvi6g0999 982 FunFam Probable disease resistance protein At1g61300 132 297 - -
Vvi6g0999 982 Pfam NB-ARC domain 154 390 IPR002182 GO:0043531
Vvi6g0999 982 Pfam Leucine rich repeat 599 655 IPR001611 GO:0005515
Vvi6g0999 982 Pfam Leucine rich repeat 531 584 IPR001611 GO:0005515
Vvi6g0999 982 Gene3D - 389 474 IPR036388 -
Vvi6g0999 982 Gene3D Ribonuclease Inhibitor 831 948 IPR032675 -
Vvi6g0999 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 404 IPR027417 -
Vvi6g0999 982 PRINTS Disease resistance protein signature 336 350 - -
Vvi6g0999 982 PRINTS Disease resistance protein signature 244 258 - -
Vvi6g0999 982 PRINTS Disease resistance protein signature 618 634 - -
Vvi6g0999 982 PRINTS Disease resistance protein signature 167 182 - -
Vvi6g0999 982 FunFam Probable disease resistance protein At1g63360 389 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0999 Vvi-Chr6 13638819 13641767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0999 168 407 WRKY Transcription Factor Family AT5G45050 27.236 1.72e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0999 K13459 - vvi:100258223 1875.91