Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0998 ATGTCAAGATCGTATACCAATCTTTTAGATTTAGCTACTGGGAATTTTCCGGCAATAGGTCGAGAACGGAAGCGGCTTCCGAGGGTAATGACGGTTCCGGGCAATGTGTATGAACTTGATGATGATCAGGCTAATAGTGTGTCGTCTGATAACCCCTCTTCAGTTGCTCAAGATCGGTTGATTATAGTGGCAAACCAGTTGCCTGTGAAAGCTAACCGAAGAGCAGATGATAGAGGCTGGGTTTTTAGTTGGAATGAAGACTCATTGCTTCTGCAACTTAAGGAGGGTTTGCCAGAAGACATGGAAGTTCTGTATGTTGGGTCATTGAGGGTTGATGTTGACTTGGAGGAACAAGAGGAAGTATCCCAGATTCTGTTGGAGACATTCAAATGTGTCCCTACTTTTCTGCCTCATGATGTTTTAGAGAAATTCTATCATGGATTCTGCAAGAAGTTGTTATGGCCGCTTTTCCATTACATGTTGCCATTTTCAGCTGATCATGGAGGTCGGTTTGATCGGTCTATGTGGGAAGCATATGTGTCGGCAAATAAGTTATTCTCACAAAAGGTTATTGAGGTGATAAACCCAGATGATGATTATGTTTGGATTCATGATTACCATTTGATGGTATTGCCAACTTTCTTGAGGAGGCACTTTAACTATCCATTTCCATCTTCAGAGATCTACAGGACTCTTCTTGTCAGAGAAGAAATTCTTAAGGCTTTGCTTAACTCAGACCTTATTGGTTTCCACACATTTGATTATGCTCGGCATTTCCTTTCTTGTTGCAGTCGGATGTTGGGTTTGGAGTATCAGTCAAAGAGGGGCTATATAGGGTTGGAATATTATGGAAGGACTGTGGGGATCAAGATTATGCCTGTTGGGATTCATATGGGCCGGATTGCTTCAGTGATGAAGCTTGCAGATAAGGAGAAGAAGGTAGGAGAGCTCAAGCAGCAGTTTGAAGGGAAAACGGTGTTGCTTGGTGTTGATGATATGGACATTTTTAAAGGTATTAATTTGAAGCTATTGGCAATGGAACAGTTGCTTCAGCAACACTCAAAGTGGCAAGGAAAGGCCGTGTTGGTTCAGATTGCAAACCCTGCAAAAGGTAAAGGAGCAGATTTAGAGGAAATACAAGCTGAAATAAGGGAAAGCTGCAGAAGAATCAATGAAGAATTTGGGGAGCCCGGGTATGAACCAATAGTTTTGTTGACAGACCAGTTTCAATCAATGAGAGAATTGCCTATTACAGTATTGCTGAGTATGTTGTTGTCACGACTGTCAGGGATGGGTTGGATTGCAGTTCAGAAATTAGAGATCAAAGAAAATGATAGAAGCTGGCTGATGTCTTCCCTTCACCAAATATTTAGCAGAAGATATTTCCTAAGAAGAAGTGCACTAAAATTATTTATGATTGACCGGTCAAACTTCTTCTTTGATTTTAGAGGCACTTGTCAAAGAGATGGGGATGTATTTGCCCACTACAGATAA 1494 0.4137 MSRSYTNLLDLATGNFPAIGRERKRLPRVMTVPGNVYELDDDQANSVSSDNPSSVAQDRLIIVANQLPVKANRRADDRGWVFSWNEDSLLLQLKEGLPEDMEVLYVGSLRVDVDLEEQEEVSQILLETFKCVPTFLPHDVLEKFYHGFCKKLLWPLFHYMLPFSADHGGRFDRSMWEAYVSANKLFSQKVIEVINPDDDYVWIHDYHLMVLPTFLRRHFNYPFPSSEIYRTLLVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYYGRTVGIKIMPVGIHMGRIASVMKLADKEKKVGELKQQFEGKTVLLGVDDMDIFKGINLKLLAMEQLLQQHSKWQGKAVLVQIANPAKGKGADLEEIQAEIRESCRRINEEFGEPGYEPIVLLTDQFQSMRELPITVLLSMLLSRLSGMGWIAVQKLEIKENDRSWLMSSLHQIFSRRYFLRRSALKLFMIDRSNFFFDFRGTCQRDGDVFAHYR* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0998 497 Pfam Glycosyltransferase family 20 59 411 IPR001830 GO:0003824|GO:0005992
Vvi6g0998 497 Gene3D Glycogen Phosphorylase B; 51 303 - -
Vvi6g0998 497 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 28 410 IPR001830 GO:0003824|GO:0005992
Vvi6g0998 497 SUPERFAMILY PH domain-like 433 488 - -
Vvi6g0998 497 Pfam PH domain associated with Beige/BEACH 439 487 IPR023362 -
Vvi6g0998 497 Gene3D Glycogen Phosphorylase B; 304 432 - -
Vvi6g0998 497 CDD GT20_TPS 59 410 IPR001830 GO:0003824|GO:0005992
Vvi6g0998 497 Gene3D - 433 492 IPR011993 -
Vvi6g0998 497 ProSiteProfiles BEACH-type PH domain profile. 376 496 IPR023362 -
Vvi6g0998 497 FunFam Uncharacterized protein 51 306 - -
Vvi6g0998 497 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 58 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0998 Vvi-Chr6 13626807 13628329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0998 1 405 Trehalose Biosynthesis Gene Families AT1G06410 77.053 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0998 K16055 - vvi:100255689 801.201