Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0997 ATGCATTCCACGTGTTTGATATTCTTGTTGTTGGTAGAATTGGCAGTAGGACAATCAGATTTTGGGGCACTCATAGAGCTCAAGAAAGGGATTCAGAAAGACCCTTCTGGAGTTCTTGATTCATGGGATTCTAAATCCTTAGCATCTGATGGGTGTCCAGAAAACTGGTTTGGGATCATCTGTAGCGAAGGCCATGTCATATCCATCACCCTAAACGACTTGGGTATAGTTGGAGACTTTCATTTCACTGCCATTACTGGCCTTAAAATGCTTCAGAACTTATCAGTTTCCAACAATCTTTTCACTGGGACTATCGAGGACGTAGGTTCCATTGAGTCATTGGCATATTTGGATCTCTCACACAATGCTTTTCATGGGCTGATACCCTCAGACTTGACCCACCTGGAGAATTTAGTTCTTCTGAACCTTTCTTCCAACAATTTTGAAGGGAAAGGGCCAACTGGTTTTGGAGATCTTGAGAAACTGAAGTATATAGATTTCAGGGCAAATGGATTTTCCGGGGACATTATGCGTCTTCTCTCTGAATTGGGTAGCGTGGTGCATGTTGACCTCAGTAGTAATCAGTTTTCCGGATCACTGGACTTGGGACTTGGAAAATCCAGCTTCGTTTCTTCGATTCAGTATTTCAATATTAGCTGCAATTCCTTAGTTGGCCAGCTTTTTGCTCATGATGGAATGCCATATTTTGACAGTTTAGAGGTGTTTGATGCTAGTAATAATCAGTTGGTGGGTGCTATTCCTTCCTTCAATTTTGTAGTCTCTCTTCAGATTCTTCGACTTGGAAGAAACCACTTAACAGGGTCTCTACCAGAAGCTCTTTTCCAGGAGAGCTCAATGATCTTGTCTGAACTAGATCTCGGCCTTAACCAGCTTGAAGGTCCTGTCGGAAGTATCACGTCTGCAACTCTAAAGAATCTTAATCTGTCTTCAAACAGGCTGACAGGTCTCTTGCCTGCCAGGGTGGGGCACTGCTCCATCATTGATCTGAGTAATAATATGCTGTCAGGGAACTTGTCCAGAATGCAAAGTTGGGGAAATTATGTGGAAATTATTGATTTAAGCTCAAACAAATTGACAGGAACCTTGCCAAACCAGACTTCTCAGTTCTTGAGGTTGATTTCACTCAAGTTATCCAACAACTCATTAGGGGGATCTCTTCCGCCTGTTTTAGGTACATACCAGGAATTAAAAGTGATTGATCTAAGCCTCAACCAGCTCACTGGGTTCCTCCTCCCAAGCTTCTTCAACTCAACAAGATTGACTGATCTTAACTTGTCTGGCAACAATTTGACTGGATCCATACCTCTGCAAGCAATCCCAGATATTCCTTCAATTGGTTCCACCCAAAATTTGAGCCTAGTTTCTCTTGATCTATCTGGTAACTCATTAAGTGGTCATTTGCCCCAAGAAATTAGTGGTTTCCATGAATTAGTTTATCTTAATCTATCTAACAACCTTTTTGAGGGTAGCATCCCTGATGACCTTCCAGATGGATTGAAAGGATTCAGTGTGTCTTATAATAATCTCTCTGGCATAGTACCTGAAAACTTGAGGAGGTTTCCTGATTCAGCATTCCATCCAGGAAATTCCTTACTGGCTTTCCCTCATTCACCATCATCATCAAATGCTGCTCCTGATCTTGATTTGAGGGGGCAAGGGTCGTCCCACATGAAGCCTGCTGTTAGGGCTGCTCTGATTGCTGGTTTGGTTGGTGGAGTTTCTATGATAGCTCTCTTGTTCGTAATGATATGTTATGGGGCCCACTGGGTAGAATGTAGCAGGGACAGTTTGAAAGGGAATGGCATGAAGAAAGGTACCGAAAAGGAGACTTCATCTGATCTTCATACATCAGCACTTCACAAAATTCTAGATCCATCAATTACTTCATCTAGTTTCCCTCAAGACAATACATCTTCATCGCACTTGGGATATGAACATGAGCATGGTATTATATCATTAGTTACAAAGAAGCCTAGTGATGGCAGCCCTCCTGAACCAATAAGAGAAGATGAAGGAATATCTTCTCCAATATCTCTCCTGTCACCTTCTAATCCATCACCTTCTAAAAGCCCATATCGGCCAGACGAGAATCCTGATGTGCTCAAGGTGTGTTCTCCAGATAAATTAGCTGGGGATCTACATCTATTTGATGGCTCTTTGGTGGTTACTTCAGAAGAACTTTCACATGCTCCGGCAGAAGTTATTGGGAGGAGTTGTCATGGAACATTATACAAAGCTACACTTGACTCTGGTCATGTATTAGCCGTAAAATGGCTGAGGGAGGGGATAGCAAAAGGAAGGAAGGAATTCTCAAGGGAAGCAAAGAAACTTGGGAACATCAAGCACCCAAATCTAGTTTCTCTGCAGGGTTACTACTGGGGTCTAAGGGAGCATGAGAAGCTGATCATATCCAACTTCATCAATGCACCGTGTTTAGCCCTTTATCTTCATCAGATGGAGCCAAGAAAATTCCCACCCCTGTCCCTGGTTGAGAGGCTCAAGATCGCTAGAGATGTAGCCTGTTGTTTGAACTTCCTCCATAACGAGAGAGCCATACCTCATGGCAACCTGAAATCGACAAATATCTTATTAGAAACTCGTAAATTAAATGCACTCCTAACTGATTACAGTCTCCACCGGATAATGACTCCTGCAGGCACTGCTGAGCAGGTTCTAAATGCAGGTGCTCTTGGCTACCGGCCACCTGAGTTTGCCAGCTCAAGTAAACCGTGCCCATCATTGAAAAGCGATGTCTATGCATACGGAGTCATCTTGTTGGAGCTGCTGACCGGAAAAAGTTCTGGGGAGATAGTGTCCGGGAACACAGGAGTGGTGGATTTGACAGAGTGGGTGAGGTGGTTGGCTGCAGAAAACCGTTGGGGTGAGTGCTTTGACAGGCTCATTCCAGGTATGCAGTCTGTGGACCACCCACCAAGATGTCTGCATGAAATGCTGCAAGTTGCTCTAAAATGTATCCTCCCAGCATCTGAGAGACCAGACATGAGGACGGTTTATGAAGATATTTCATCTGTAGTGTTATGA 3063 0.4358 MHSTCLIFLLLVELAVGQSDFGALIELKKGIQKDPSGVLDSWDSKSLASDGCPENWFGIICSEGHVISITLNDLGIVGDFHFTAITGLKMLQNLSVSNNLFTGTIEDVGSIESLAYLDLSHNAFHGLIPSDLTHLENLVLLNLSSNNFEGKGPTGFGDLEKLKYIDFRANGFSGDIMRLLSELGSVVHVDLSSNQFSGSLDLGLGKSSFVSSIQYFNISCNSLVGQLFAHDGMPYFDSLEVFDASNNQLVGAIPSFNFVVSLQILRLGRNHLTGSLPEALFQESSMILSELDLGLNQLEGPVGSITSATLKNLNLSSNRLTGLLPARVGHCSIIDLSNNMLSGNLSRMQSWGNYVEIIDLSSNKLTGTLPNQTSQFLRLISLKLSNNSLGGSLPPVLGTYQELKVIDLSLNQLTGFLLPSFFNSTRLTDLNLSGNNLTGSIPLQAIPDIPSIGSTQNLSLVSLDLSGNSLSGHLPQEISGFHELVYLNLSNNLFEGSIPDDLPDGLKGFSVSYNNLSGIVPENLRRFPDSAFHPGNSLLAFPHSPSSSNAAPDLDLRGQGSSHMKPAVRAALIAGLVGGVSMIALLFVMICYGAHWVECSRDSLKGNGMKKGTEKETSSDLHTSALHKILDPSITSSSFPQDNTSSSHLGYEHEHGIISLVTKKPSDGSPPEPIREDEGISSPISLLSPSNPSPSKSPYRPDENPDVLKVCSPDKLAGDLHLFDGSLVVTSEELSHAPAEVIGRSCHGTLYKATLDSGHVLAVKWLREGIAKGRKEFSREAKKLGNIKHPNLVSLQGYYWGLREHEKLIISNFINAPCLALYLHQMEPRKFPPLSLVERLKIARDVACCLNFLHNERAIPHGNLKSTNILLETRKLNALLTDYSLHRIMTPAGTAEQVLNAGALGYRPPEFASSSKPCPSLKSDVYAYGVILLELLTGKSSGEIVSGNTGVVDLTEWVRWLAAENRWGECFDRLIPGMQSVDHPPRCLHEMLQVALKCILPASERPDMRTVYEDISSVVL* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0997 1020 Gene3D Transferase(Phosphotransferase) domain 1 818 1019 - -
Vvi6g0997 1020 Pfam Leucine rich repeat N-terminal domain 19 62 IPR013210 -
Vvi6g0997 1020 SUPERFAMILY L domain-like 210 447 - -
Vvi6g0997 1020 SUPERFAMILY L domain-like 30 282 - -
Vvi6g0997 1020 FunFam Leucine-rich repeat receptor-like protein kinase 721 813 - -
Vvi6g0997 1020 Pfam Protein tyrosine and serine/threonine kinase 740 1014 IPR001245 GO:0004672|GO:0006468
Vvi6g0997 1020 SUPERFAMILY L domain-like 458 528 - -
Vvi6g0997 1020 Gene3D Ribonuclease Inhibitor 207 549 IPR032675 -
Vvi6g0997 1020 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 257 548 - -
Vvi6g0997 1020 FunFam Nuclear pore complex protein NUP107 17 178 - -
Vvi6g0997 1020 Gene3D Ribonuclease Inhibitor 20 180 IPR032675 -
Vvi6g0997 1020 FunFam Pollen receptor-like kinase 1 814 1020 - -
Vvi6g0997 1020 SMART LRR_typ_2 259 283 IPR003591 -
Vvi6g0997 1020 SMART LRR_typ_2 481 505 IPR003591 -
Vvi6g0997 1020 SMART LRR_typ_2 111 134 IPR003591 -
Vvi6g0997 1020 SMART LRR_typ_2 135 158 IPR003591 -
Vvi6g0997 1020 MobiDBLite consensus disorder prediction 661 708 - -
Vvi6g0997 1020 PANTHER OS07G0626500 PROTEIN 6 106 - -
Vvi6g0997 1020 Gene3D Phosphorylase Kinase; domain 1 731 813 - -
Vvi6g0997 1020 ProSiteProfiles Protein kinase domain profile. 736 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0997 1020 SUPERFAMILY Protein kinase-like (PK-like) 739 1013 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0997 Vvi-Chr6 13605056 13610642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0997 238 555 Receptor kinase-like Gene Family AT3G51740 35.061 6.96e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi6g0997 PK_Tyr_Ser-Thr 1.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0997 - - vvi:100242827 1971.44