Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0961 ATGGATTCTGGGGAAGATGGAAATGGGGCACAAGATGCTTTGCCACCTCCCCCACCTGTTCCGCCAAATGTTGTTCCAATAAAAGCTGATTCAGTTGCTTCTGAGCCAGTTAAGAAAAAGGTCGCACGTGTTCCAATAGCTCGCCGTGGCTTTGCATCCAAGGGGCAAAAAATAGCACTAACTACTAACCACTTCAAAGTTAATGTTACTGGTGCTGATGGTCACTTCTTCCATTACAGTGTTTCCCTTTCATATGAAGATGGCCGTCCTGTTGATGGTAAGGGAATTGGAAGAAAGGTTATCGATAGAGTTCATGAGACATATGATAGCGAGTTAGGTGGAAAGGACTTTGCTTATGATGGGGAGAAGAGTTTGTTCACAGTTGGTCCTCTTCCACGAAACAAACTTGAGTTCACTGTTGTGCTTGAGGATGTTTCATCAAATAGGAATAATGGCAATGGAAGTCCTGATCGTGGTAGTCCGAATGAGAGTGATCGAAAAAGGATGCGGCGTCCTTACCAGTCAAAGACTTTTAAAGTAGAGATTAGCTTTGCTGCTAAAATACCAATGCAGGCAATTGCCAATGCACTACGTGGTCAAGAATCAGAAAACTCTCAAGAAGCACTTAGAGTTTTGGATATCATTTTAAGGCAGCATGCATCAAAACAGGGTTGCCTCCTTGTTCGTCAATCCTTTTTTCACAATGATCCAAAAAATTTCATTGATTTGGGAGGGGGCGTTCTTGGCTGCAGAGGATTCCATTCAAGTTTTCGAACCACCCAAGGAGGCTTATCACTGAATATTGATGTATCTACTACCATGATAGTGCAACCTGGGCCAGTGGTTGATTTTTTAATTGCCAATCAAAATGCGAGGGATCCTTTTTCCCTGGACTGGGCTAAGGCCAAGAAAATGCTAAAAAATCTGAGGGTGAAGACAAGCCCCTCAAACACCGAGTACAAAATAACTGGACTGAGTGAGAAGCCTTGCAAGGAGCAGTTGTTTACGCTTAAGCAAAGAAATGGGAAGGATGAGAATGGCGAGGCCCAAACGATTGAAGTGACTGTTTTTGATTATTTTGTTAATCATCGCCGCATAGAACTACGTTATTCTGCAGATTTACCTTGCATTAATGTTGGGAAGCCAAAACGACCGACTTACTTCCCTATAGAGCTTTGTACCTTGGTGTCGTTACAACGTTATACTAAAGCGTTGTCCACTCTTCAAAGAGCTTCACTGGTGGAAAGATCAAGGCAAAAACCACAAGAAAGGATAGGAGTTTTGACTAATGCTTTGAGAAGCAACAATTATGATGCTGAGCCTATGCTACGTTCCTGTGGCATTTCAATAAGCAGAGACTTGACCCAAATTGAAGGCCGTGTTCTGGCAGCTCCAAGGTTGAAAGTTGGTAATGGGGAGGATTTCTTTCCACGAAATGGGCGGTGGAATTTTAACAATAAGAAACTGGTGGAGCCCACAAAGATAGAACGTTGGGCTGTGGTCAACTTCTCGGCTCGCTGTGATATTCGAAACCTCGTCCGAGAACTGATCAAATGTGGAGGAATGAAAGGAATTCACATTGATCCTCCATTTGATGTATTTGAAGAGAATCCACAATCTCGACGAGCCCCACCCATTGTTAGGGTGGAGAAAATGTTTGAGGAGATACAGTCTAAACTCCCTGGAGCTCCTCAGTTCCTTCTCTGTCTACTTCCAGAGAGGAAAAACTCTGATCTATATGGTCCTTGGAAACGAAAGAATCTTTCTGAATATGGAATTGTGACTCAATGCATTGCTCCTACAAGGGTTAATGATCAATATCTTACGAATGTTCTCCTAAAGATTAATGCAAAACTTGGTGGATTAAATTCTATGCTAGCAGTAGAACATTCCCCTTCTATTCCAATTGTTTCGAAGGGACCCACCATAATCCTTGGGATGGATGTGTCTCATGGTTCTCCTGGACAATCTGATGTACCATCTATTGCTGCGGTTGTCAGCTCCAGGCAGTGGCCACTGATTTCGCGCTATAGAGCATCAGTTCGTACACAATCTCCAAAGGTTGAGATGATTGATTCTCTGTATAAGCGAGTATCTGAAACTGAAGATGAAGGCATAATTAGAGAGCTTTTGCTAGACTTTTATGTGAGTTCAGGCAAAAGAAAACCCGATCAGATTATCATATTCAGGGATGGAGTCAGCGAGTCTCAGTTCAATCAAGTTCTGAACATCGAACTGGATCAAATTATTGAGGCCTGCAAGTTCCTTGATGAGAAGTGGTCTCCCAAATTTGTGGTGATTGTTGCGCAGAAAAACCATCATACCAAGTTTTTCCAACATGGATCTCCTGATAACGTCCCACCTGGCACAGTCATAGACAACAAAGTTTGTCATCCACGGAACAATGACTTTTATCTCTGTGCACATGCTGGAATGATTGGTACTACCAGGCCGACGCATTACCACGTTCTATTGGATGAAGTTGGTTTCTCTTCGGATGATCTTCAGGAGCTTGTGCATTCTTTATCCTATGTGTACCAAAGGAGCACCACTGCCATTTCCGTAGTTGCTCCCATATGCTATGCCCACTTAGCAGCTACTCAGATGTCTCAGTTCATGAAGTTTGAAGACACGTCAGAGACATCCTCAAGCCAAGGTGGACTGACGTCAGCAGGGCCTGTTCCAGTGCCTCAACTCCCCAAATTGCAGGAGAGTGTCTGCAATTCGATGTTCTTTTGCTGA 2742 0.434 MDSGEDGNGAQDALPPPPPVPPNVVPIKADSVASEPVKKKVARVPIARRGFASKGQKIALTTNHFKVNVTGADGHFFHYSVSLSYEDGRPVDGKGIGRKVIDRVHETYDSELGGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDVSSNRNNGNGSPDRGSPNESDRKRMRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQEALRVLDIILRQHASKQGCLLVRQSFFHNDPKNFIDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNARDPFSLDWAKAKKMLKNLRVKTSPSNTEYKITGLSEKPCKEQLFTLKQRNGKDENGEAQTIEVTVFDYFVNHRRIELRYSADLPCINVGKPKRPTYFPIELCTLVSLQRYTKALSTLQRASLVERSRQKPQERIGVLTNALRSNNYDAEPMLRSCGISISRDLTQIEGRVLAAPRLKVGNGEDFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARCDIRNLVRELIKCGGMKGIHIDPPFDVFEENPQSRRAPPIVRVEKMFEEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLSEYGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSMLAVEHSPSIPIVSKGPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLYKRVSETEDEGIIRELLLDFYVSSGKRKPDQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWSPKFVVIVAQKNHHTKFFQHGSPDNVPPGTVIDNKVCHPRNNDFYLCAHAGMIGTTRPTHYHVLLDEVGFSSDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMSQFMKFEDTSETSSSQGGLTSAGPVPVPQLPKLQESVCNSMFFC* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0961 913 SMART Piwi_a_2 566 874 IPR003165 GO:0003676
Vvi6g0961 913 SMART DUF1785_2 226 278 IPR014811 -
Vvi6g0961 913 Pfam N-terminal domain of argonaute 56 216 IPR032474 -
Vvi6g0961 913 FunFam Protein argonaute 7 273 401 - -
Vvi6g0961 913 MobiDBLite consensus disorder prediction 147 172 - -
Vvi6g0961 913 SUPERFAMILY Ribonuclease H-like 550 872 IPR012337 -
Vvi6g0961 913 Pfam PAZ domain 282 413 IPR003100 GO:0005515
Vvi6g0961 913 CDD PAZ_argonaute_like 278 396 - -
Vvi6g0961 913 Gene3D - 461 627 - -
Vvi6g0961 913 Pfam Argonaute linker 1 domain 228 276 IPR014811 -
Vvi6g0961 913 FunFam Protein argonaute 3 634 913 - -
Vvi6g0961 913 CDD Piwi_ago-like 441 868 IPR045246 -
Vvi6g0961 913 Gene3D paz domain 272 401 - -
Vvi6g0961 913 Pfam Mid domain of argonaute 477 529 IPR032473 -
Vvi6g0961 913 Gene3D - 633 913 IPR036397 GO:0003676
Vvi6g0961 913 ProSiteProfiles Piwi domain profile. 566 874 IPR003165 GO:0003676
Vvi6g0961 913 ProSiteProfiles PAZ domain profile. 320 397 IPR003100 GO:0005515
Vvi6g0961 913 MobiDBLite consensus disorder prediction 1 23 - -
Vvi6g0961 913 Pfam Piwi domain 567 874 IPR003165 GO:0003676
Vvi6g0961 913 Pfam Argonaute linker 2 domain 423 468 IPR032472 -
Vvi6g0961 913 SUPERFAMILY PAZ domain 273 438 IPR036085 GO:0005515
Vvi6g0961 913 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 52 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0961 Vvi-Chr6 12831950 12838995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0961 48 913 Eukaryotic Initiation Factors Gene Family AT5G43810 36.475 4.87e-173 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0961 K11593 - vvi:100241029 1825.83