Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0960 ATGGCGAAGAAGAGAAAGTCCCAAGAACAGCTGCAACCAAAACAAGAGGAGGAAGAAGAATCTGAAGAGGAAGATTCTTCCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGGTGAAGAAGAAGATTCATCTGAAGAAGAGAACTCTTCCGAAGAAGAAGAGGACTCGTCAGAAGATGCTGACGAAGCTGACAATGAAGACGATTCGGAGGCCTCTAAGCGCGAAACGATCCGCAAACTCCTCCAACCCTTCGGCAAAGACCAGATCATCGCCTTACTCAAAGAGGCTGCGGATTCCAACCCTGCCACCTTGTCCAAGATCCTCCCCGCGGTGGAATCCGATCCCGTCCACCGCAAAATTTTCGTCCACGGCCTTGGCTGGGACGCCACCAACGAAACCCTAACCTCCGCCTTTAAACAGTATGGCCAGATTGAAGAATGCAATGTGGTTACAGATAAGATCACCGGCCGGTCCAAGGGTTATGGATTTGTGCTATTCAAGACTCGTTCCGGCGCCAGGAAGGCGCTGAAGCAGCCGCAGAAGAAGATTGGGAACCGAATGGCCGCCTGCCACCTGGCTGCGGCTGGCCCGAGCGGGAGCAACCCCGCTGCAGGGGCGGATGTGAATGAGCGGAGACTGTATGTAGGCAATGTGGGGCCGCAGATCAGTGCGGAGAAGCTCAGGACGTTTTTTGCCAAATTTGGGGAGATTGAGGATGGGCCTTTGGGGTTTGATAAGGCCACTGGGAAGTTTCGAGGATTTGCCATAATTGTGTTTAAGACTGCAGAGGGGATGAAGAGGGCATTGGAGGAACCAATTAAGACGTTTGAGAGTTGTAAATTGCAGTGTTCCAGGAAAGTTGCTAAAACGACCCCCGTCCAACAACAGGCGGTTGCAGGTTCCACTGGGGCCACATTGCCTCCTAGTAATTATCAACTGCAGGCATACCAAATGGGATTGAATCAGGGGTTGATTGGGCAAAATGTGAACCCTCAAGGGGTTCTGGTGGGTCATAATCAGGCTGTTGGCATTCTGAACCCAGTGTTAGGTGCAGCTGCGGCACTTAATCAACCGGGTTTGTCCCAGGGATTTGCAGGTGGGTTGTCGCAGCCTGTGAACAGGGCTCCTCCTGTGGGGTTGAGCGCAGGGTTTGGTCCACAGCTTGGTATGAATAGTATAAATCCGGGTGTGCTTGGTGCTTATGGTTCTCCGGCTGCTTTCCAAGGGTTGGGTGCGTACCAGAGCTCCCAATTGGGTCAGTCTCCTGCATCAGCTGCTGCTGCAGGAGCTGGGAGGCCTCACCCTGGTGTTGGATCAGTAGGGACCTTGCCGTCATACTTTGGGCGCTAG 1374 0.524 MAKKRKSQEQLQPKQEEEEESEEEDSSEEEEEEEEEEEEDDDDDDGEEEDSSEEENSSEEEEDSSEDADEADNEDDSEASKRETIRKLLQPFGKDQIIALLKEAADSNPATLSKILPAVESDPVHRKIFVHGLGWDATNETLTSAFKQYGQIEECNVVTDKITGRSKGYGFVLFKTRSGARKALKQPQKKIGNRMAACHLAAAGPSGSNPAAGADVNERRLYVGNVGPQISAEKLRTFFAKFGEIEDGPLGFDKATGKFRGFAIIVFKTAEGMKRALEEPIKTFESCKLQCSRKVAKTTPVQQQAVAGSTGATLPPSNYQLQAYQMGLNQGLIGQNVNPQGVLVGHNQAVGILNPVLGAAAALNQPGLSQGFAGGLSQPVNRAPPVGLSAGFGPQLGMNSINPGVLGAYGSPAAFQGLGAYQSSQLGQSPASAAAAGAGRPHPGVGSVGTLPSYFGR* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0960 457 MobiDBLite consensus disorder prediction 1 81 - -
Vvi6g0960 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 288 IPR000504 GO:0003723
Vvi6g0960 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 194 IPR000504 GO:0003723
Vvi6g0960 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 228 IPR000504 GO:0003723
Vvi6g0960 457 MobiDBLite consensus disorder prediction 15 74 - -
Vvi6g0960 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 295 IPR000504 GO:0003723
Vvi6g0960 457 PANTHER GEO13361P1-RELATED 214 434 - -
Vvi6g0960 457 Gene3D - 204 307 IPR012677 -
Vvi6g0960 457 SUPERFAMILY RNA-binding domain, RBD 125 207 IPR035979 GO:0003676
Vvi6g0960 457 SMART rrm1_1 220 292 IPR000504 GO:0003723
Vvi6g0960 457 SMART rrm1_1 127 199 IPR000504 GO:0003723
Vvi6g0960 457 Coils Coil 4 40 - -
Vvi6g0960 457 Gene3D - 119 203 IPR012677 -
Vvi6g0960 457 MobiDBLite consensus disorder prediction 432 457 - -
Vvi6g0960 457 SUPERFAMILY RNA-binding domain, RBD 212 299 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0960 Vvi-Chr6 12801773 12803146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0960 211 282 C2H2 Transcription Factor Family AT2G19380 36.111 1.12e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0960 K12741 - vvi:100263294 750.355