Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0959 ATGACCCTGAAGTGCATTCGTATCTACTGCCTCTTTCGTCACGCACTATCATTGAAGCGATTTAGCCGCTTCTCAAACCCTAGCTCCACAAGAAACCCTAACCCTAATTTCTCCATGGCTAAGAAGCGAAAGCTCCGTTCTTCCGAGCCCGAATCCTCCAAAGCCCCTGAGCAAGAGGAGCAGCCACAGCCCACGCAGGAAGAAGATGATCAGACCAAATTTGAACCCATCCAGGAAGACGAAGATCAGCCACAACACATGGCTGAAGACGAACCCAAACACGAAGCCCAAGGAGAAGAAGAAGAGGAGGAGGAGGGGGAAGGGGAAGAGGAAGAGGAAGAAGAAGGTGACCAGGAAGGAGATGTGGACGCGTCGAATGAAGCCGTCGCGGATGAGGTGCCAGCGGATGCGAACGGCGATGGGGTTGAGGAGGATGAAGGGGATGTGGAGGATGAGGAGATTGAGAAGCTTCTGGAGCCCTTCTCGAAAGAGCAGCTGCTGGCTTTGCTTCGGGAGGCAGTGGAAAAGTACCCGGACTTCGTTGATAGCGTACGAAGACTCGCCGACGCCGACCCGGCTCACCGAAAAATCTTCGTCCACGGCCTGGGATGGGACACGACCGCAGAAACCCTAACCTCTGTGTTTGGCAAGTATGGTGAGATTGAAGACTGCAAGGCCGTATCGGACAAGATCTCCGGAAAATCCAAGGGATACGCCTTTATTCTGTTCAAGCACCGGAGCGGCGCTCGCAAGGCGCTGAAGCAGCCGCAGAAGAAGATTGGAAATCGGATGACCTCGTGCCAGCTAGCCTCTGCCGGCCCCGTTCCAGCGCCGCCACCGGTGGTACCTCCGGTGTCTGAGTATACTCAAAGAAAGATTTTTGTGAGCAATGTTTCTTCGGAGATCGATCCGCAGAAGCTACTAGAGTTCTTTGCGAAGTTTGGGGAAATCGAGGAGGGTCCATTAGGCTTAGATAAGTCGACTGGGAAGCCCAAGGGTTTCGCTTTGTTCGTTTACAAGTCGATTGAGAGCTCGAGGAGGGCATTGGAGGAGCCACACAAAATTTTTGAGGGTCACACACTGCATTGCCAGAAGGCAATTGATGGGCCGAAGCCAAATAAGCCTTTCCACCATCACCACCACCAACACCAACCACATTACCCTTCAAGGAAGGACAAATCAAAATACTCAGCCAACGCCGCTGGCCCAGGGCACCTGATGGCACCATCAGGGCCATCAATGACTTTGAACCCAGGTGTTGCACCAGCTTTGAACCCGGCTCTTGGGCAAGCATTGACTGCATTGCTTGCTTCACAAGGGGCAGGACTGGGGCTCACCAATCTGCTTGGAGGTCTTGGTGGTGCACCAGTGAACCAGGCTATGCCGCCTGCGGCACATGGAATGCAGGGAATGCAGGGTGGGTATGGAAATCAGGGTGCTGGCAGCTACGGAAGTCAGCCGGGAATGCAGGGCGGGTACCAAAACCCACAAATGGGGCAGGCCAGTGGAGGCAGGCCTCAGCAGGGTGGGGCACCGTATATGGGTCACTAG 1551 0.5455 MTLKCIRIYCLFRHALSLKRFSRFSNPSSTRNPNPNFSMAKKRKLRSSEPESSKAPEQEEQPQPTQEEDDQTKFEPIQEDEDQPQHMAEDEPKHEAQGEEEEEEEGEGEEEEEEEGDQEGDVDASNEAVADEVPADANGDGVEEDEGDVEDEEIEKLLEPFSKEQLLALLREAVEKYPDFVDSVRRLADADPAHRKIFVHGLGWDTTAETLTSVFGKYGEIEDCKAVSDKISGKSKGYAFILFKHRSGARKALKQPQKKIGNRMTSCQLASAGPVPAPPPVVPPVSEYTQRKIFVSNVSSEIDPQKLLEFFAKFGEIEEGPLGLDKSTGKPKGFALFVYKSIESSRRALEEPHKIFEGHTLHCQKAIDGPKPNKPFHHHHHQHQPHYPSRKDKSKYSANAAGPGHLMAPSGPSMTLNPGVAPALNPALGQALTALLASQGAGLGLTNLLGGLGGAPVNQAMPPAAHGMQGMQGGYGNQGAGSYGSQPGMQGGYQNPQMGQASGGRPQQGGAPYMGH* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0959 516 MobiDBLite consensus disorder prediction 463 516 - -
Vvi6g0959 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 272 IPR000504 GO:0003723
Vvi6g0959 516 SUPERFAMILY RNA-binding domain, RBD 192 279 IPR035979 GO:0003676
Vvi6g0959 516 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 78 373 - -
Vvi6g0959 516 SMART rrm1_1 196 268 IPR000504 GO:0003723
Vvi6g0959 516 SMART rrm1_1 292 364 IPR000504 GO:0003723
Vvi6g0959 516 SUPERFAMILY RNA-binding domain, RBD 275 383 IPR035979 GO:0003676
Vvi6g0959 516 MobiDBLite consensus disorder prediction 42 56 - -
Vvi6g0959 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 263 IPR000504 GO:0003723
Vvi6g0959 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 362 IPR000504 GO:0003723
Vvi6g0959 516 MobiDBLite consensus disorder prediction 366 413 - -
Vvi6g0959 516 MobiDBLite consensus disorder prediction 95 126 - -
Vvi6g0959 516 MobiDBLite consensus disorder prediction 23 37 - -
Vvi6g0959 516 MobiDBLite consensus disorder prediction 66 94 - -
Vvi6g0959 516 MobiDBLite consensus disorder prediction 475 504 - -
Vvi6g0959 516 MobiDBLite consensus disorder prediction 374 388 - -
Vvi6g0959 516 Gene3D - 187 273 IPR012677 -
Vvi6g0959 516 MobiDBLite consensus disorder prediction 137 152 - -
Vvi6g0959 516 Gene3D - 283 399 IPR012677 -
Vvi6g0959 516 MobiDBLite consensus disorder prediction 23 152 - -
Vvi6g0959 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 368 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0959 Vvi-Chr6 12769878 12771428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0959 261 370 C2H2 Transcription Factor Family AT2G19380 30.000 1.61e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0959 K12741 - vvi:100258161 842.802