Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0952 ATGACAGCACCATACCATGATTCTGATACTGGTTGCAGACAGCTTCACGAGTACTCTGATAGGGAAGCAAAGTGCTCCTATGTGAAATCTCATACAGGATGCCAAAATGGAGGTTACATATCCTATCTCCAGCTCTTTTACTGCAACTTTGACCCGGTGCTAGGCTACTCAGCACTCATCCTCTGGCTTTTAGTTCTATTCTATTTGTTGGGCAACACAGCTGCCAATTACTTTTGTTGTTCATTAGAGGGCTTGTCAAGAATTTTGAAGCTTTCTCCAAACATAGCTGGTGTTACTCTTCTTTCACTGGGAAACGGTGCACCCGATCTCTTTGCCAGCATAGTCTCTTTCATGGGAGATGAGACTGAAAAGGTCGGCCTCAATAGCATTTTGGGTGGCGCATTCTTTGTATCAAGCATAGTTGTTGGGATTATAAGCATTTCTGTCTGTCATTCTCGACCGTCCATTGAAAGGTCCAGCTTCATATGGGATGTTACTTTCTTCCTTCTCTCCTTGGCTTGCCTACTTGTCATCATAATGTTGGGAAAAATTAATTTGTGGGGTGCTATCTCTTTTTTTTCTCTGTATTTTATATATGTACTCTTCATATCCACCTCACATCTATGCCATCGTAAAGAGGGAGTAGGGGATGATCGTGCAGCATCTGGATCTCCAATACTGCCTGTTACTAAGAACTTTCTCGAGTACCAAACAGAAGGACTATGTGAAGTGGAAGAGCCTTTGTTAGGTTTTGTGGGTGATGATAAGCCAATTTCGATGGAAAAATCGGGACTAGTTCAAGTTGGTGATGACAGGAAACGAAGAAGAAGGTGTTTGGATCTTCAACCTTCAACTTCTAGTCACTTGTTTGTTTGCAGGCTCTTGTTCTTTCTGGAGCTGCCACTTTACTTGCCTAGAAGGCTAACAATTCCGGTCATCACCGCCGAGAGATGGTCGAAGCCATTTGCAGTGGTCTCAGTGACAATAGCTCCTGTTCTAGTAGCTGTTGTTTGGAATTCGCATGGCTCCAAACCAAGCTGGCTGGTTTACCTAATTGGTGCGTCAGTTGGGACCATTTCTGGAGTCGTGGCATTTTTCACGACAGAGAGGTCTAACCCACCAACGAAATGGTTGTTCCCATGGCATGCTGGAGGGTTTTTGATGAGCATCACATGGACATATATTGCAGCAGACGAGCTTATTTCCCTGTTGGTCTCACTGGGATTGATATTAGGGATAAGCCCTTCAATCCTAGGGCTGACTGTCCTTGCATGGGGTAACTCCCTTGGGGACTTGGTATCCAATGTTACCATGGCACTAAATGGAGGAGCAGAGGGTGCCCAAGTGGCTCTATCAGGATGCTATGCAGGCCCCATATTCAATACACTGATTGGCTTGGGATTGCCACTTGCTTTCTCAGCTTGGTCAGAGTACCCAGCATCTTACATCATCCCCAAAGACAATTCAGACTATGAAACTCTGGGGTTTCTAATGGGTGGCTTGCTTTGGGCCCTTGTAATCCTTCCCAAGAGAAACATGGTGCTTGATAGGTGCCTAGGTGGTGGGCTTGTGGCCATATATCTGTGCTTTCTCTCTCTAAGAATTGCAAGAGCTCTGGTGCCTAACTAG 1629 0.4524 MTAPYHDSDTGCRQLHEYSDREAKCSYVKSHTGCQNGGYISYLQLFYCNFDPVLGYSALILWLLVLFYLLGNTAANYFCCSLEGLSRILKLSPNIAGVTLLSLGNGAPDLFASIVSFMGDETEKVGLNSILGGAFFVSSIVVGIISISVCHSRPSIERSSFIWDVTFFLLSLACLLVIIMLGKINLWGAISFFSLYFIYVLFISTSHLCHRKEGVGDDRAASGSPILPVTKNFLEYQTEGLCEVEEPLLGFVGDDKPISMEKSGLVQVGDDRKRRRRCLDLQPSTSSHLFVCRLLFFLELPLYLPRRLTIPVITAERWSKPFAVVSVTIAPVLVAVVWNSHGSKPSWLVYLIGASVGTISGVVAFFTTERSNPPTKWLFPWHAGGFLMSITWTYIAADELISLLVSLGLILGISPSILGLTVLAWGNSLGDLVSNVTMALNGGAEGAQVALSGCYAGPIFNTLIGLGLPLAFSAWSEYPASYIIPKDNSDYETLGFLMGGLLWALVILPKRNMVLDRCLGGGLVAIYLCFLSLRIARALVPN* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0952 542 Gene3D - 310 536 IPR044880 -
Vvi6g0952 542 Gene3D - 91 229 IPR044880 -
Vvi6g0952 542 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 7 538 - -
Vvi6g0952 542 Pfam Sodium/calcium exchanger protein 60 203 IPR004837 GO:0016020|GO:0055085
Vvi6g0952 542 Pfam Sodium/calcium exchanger protein 382 535 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0952 Vvi-Chr6 12556019 12557647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0952 7 537 Antiporters AT5G17860 51.115 3.31e-175 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0952 K13754 - vvi:100261580 1035.4