Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0946 ATGTCGGACGATATGATCATCCATTTCTCCTCCAACTCTTCAAACCACTCCGATCAGTCTCTACCCACCAAGATTGCAAAGCTCGAAGCTCGCATGGTCGGCAGAGACCCCTCGGCCGTGCCGGCCACTTCCACGGCGCCGGCAACCTGGTCGTCTGCCTCTGTCTCCTCCAAGTTCGTGCCTGCCGAAAATTTGGCCGAATTGGGGACTTCGAGCGATTCAGATGATGATAATGGAGGGGATTTTCTTATTCAAGCCAACACTCAGAAGCGCCAGAAACTTCAAGAAGATGACTCAACTGTTTTTGAACATGTTGAGGCAGTTGCTGATGGAAGGCAGAAGATTGTGGAGACCATGGAAACCAAGGCTGGCTTTGATGTAAATAGGAAAAAACAGGGCCGTGGTAGGGGGCATGCTGGTTCGGGCAGAGGGCGTGGTTCCAGAGCTAGTGATCAGACAAGGGCTCATATTTCTCCTTCAACCATTTCGCCTTCAAATGGTCAGCTTGAGATCTCATGTCATAAGGACAATAGGTCCAAAGAGCAGTTTGGGAATGACGATCGCTCTTCATTAGAGGATGTTGCATCTTTACGTGCAAAGATTACAGCATTGGAGGAGGACCTGCAGAAATCACGTCAAGAGTCCTCTCATTATCAACAACTTTGCCACCAGCTTGAAAAGGAATTGAAGGACCTAAAAGATCATGAACAGCAGATGAAGCCAAAGAGAATGAAAATAATGTCTGATTTGCTGATATCGGTTTCAAAAGCTGAGAGACAAGAAGCAAGGATGAAAGTACGGCAGGATTCTTTGAGACTTGGCAATGTGGGCGTAATCAGAGCTGGAACTGTCATATCTGAGACATGGGAGGATGGGCAAACATTGAAAGATCTCAATGCTCATCTTAGGCATTTATTAGAAATGAAGGAGGCTGTTGAGCGCCAGAGGAAGTCATTGAAAAAACGACAATCTGATAAGGGTGATGGAATTGATGCGGAAACTGGAGTGCAAGAAGAAGATTTTCTCATTCATGATGAGATCTATAAATCCCGTCTTGCAAGTATCAAACGTGAGGAAGAAACTTTTCTGCGTGAGAGGGATCGCTATGAACTGGACAAGGGAAGGCTTATACGTGAAATGAAACGTATAAGGGATGAGGATGGTTCTCGCTTTAACAACTTTCAGATTCTGAACCACCGATACGCCCTTCTGAACCTTCTTGGGAAAGGAGGATTCAGTGAAGTTTACAAGGCTTACGACTTGGTAGAGCATAGATACGTTGCATGTAAGCTCCATGGTTTGAATGCCCAGTGGAGTGAAGAGAAGAAGCAAAGTTACATACGGCATGCGATTCGAGAGTATAACATTCACAAAACCTTGGTGCACCATCACATTGTTCGGCTTTGGGACATTTTTGAGATTGACCATAATGCGTTCTGCACTGTCCTAGAGTACTGTAGTGGTAAAGATCTTGATGCAGTTCTAAAAGCAACACCTATATTACCTGAGAGGGAAGCTAGGATTATTATTGTCCAGATATTTCAAGGCCTGGTATACTTGAACAAAAGAACGCAAAAGATTATTCATTATGATTTGAAACCAGGGAATGTTCTATTTGATGACCTTGGTGTAGCAAAAGTGACCGACTTTGGTCTTAGCAAGATAGTGGAGGATGATGTTGGATCCCAGGGAATGGAACTTACATCCCAGGGAGCTGGAACATACTGGTATTTGCCCCCGGAGTGCTTTGAGCTCAGCAAGACACCTCTCATATCATCAAAGGTAGATGTTTGGTCAGCTGGTGTTCTATTTTACCAAATGCTTTTTGGCAGGCGCCCTTTTGGGCATGACCAGACCCAAGAGCGGATACTGCGAGAGGACACCATTATCAATGCTCGCAAGGTGGAATTCCCATCAAGACCAGCTGTATCTAATGAGGCAAAGGACCTGATTCGGCGATGTCTAACATATAACCAAGCAGAGAGACCAGATGTTTTAACCATTGCTCAAGATCCATATCTCACATACTCAAAGAAATGA 2040 0.4495 MSDDMIIHFSSNSSNHSDQSLPTKIAKLEARMVGRDPSAVPATSTAPATWSSASVSSKFVPAENLAELGTSSDSDDDNGGDFLIQANTQKRQKLQEDDSTVFEHVEAVADGRQKIVETMETKAGFDVNRKKQGRGRGHAGSGRGRGSRASDQTRAHISPSTISPSNGQLEISCHKDNRSKEQFGNDDRSSLEDVASLRAKITALEEDLQKSRQESSHYQQLCHQLEKELKDLKDHEQQMKPKRMKIMSDLLISVSKAERQEARMKVRQDSLRLGNVGVIRAGTVISETWEDGQTLKDLNAHLRHLLEMKEAVERQRKSLKKRQSDKGDGIDAETGVQEEDFLIHDEIYKSRLASIKREEETFLRERDRYELDKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAYDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHHHIVRLWDIFEIDHNAFCTVLEYCSGKDLDAVLKATPILPEREARIIIVQIFQGLVYLNKRTQKIIHYDLKPGNVLFDDLGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGVLFYQMLFGRRPFGHDQTQERILREDTIINARKVEFPSRPAVSNEAKDLIRRCLTYNQAERPDVLTIAQDPYLTYSKK* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0946 679 Coils Coil 194 238 - -
Vvi6g0946 679 ProSitePatterns Protein kinases ATP-binding region signature. 407 430 IPR017441 GO:0005524
Vvi6g0946 679 Coils Coil 295 322 - -
Vvi6g0946 679 MobiDBLite consensus disorder prediction 42 57 - -
Vvi6g0946 679 CDD STKc_TLK 400 673 - -
Vvi6g0946 679 MobiDBLite consensus disorder prediction 1 21 - -
Vvi6g0946 679 ProSiteProfiles Protein kinase domain profile. 401 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0946 679 MobiDBLite consensus disorder prediction 146 171 - -
Vvi6g0946 679 MobiDBLite consensus disorder prediction 36 57 - -
Vvi6g0946 679 Gene3D Transferase(Phosphotransferase) domain 1 392 679 - -
Vvi6g0946 679 MobiDBLite consensus disorder prediction 121 171 - -
Vvi6g0946 679 SMART serkin_6 401 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0946 679 SUPERFAMILY Protein kinase-like (PK-like) 393 675 IPR011009 -
Vvi6g0946 679 PANTHER MIXED LINEAGE PROTEIN KINASE 11 678 - -
Vvi6g0946 679 Coils Coil 366 386 - -
Vvi6g0946 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Vvi6g0946 679 Pfam Protein kinase domain 402 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0946 679 FunFam Serine/threonine-protein kinase TOUSLED 392 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0946 Vvi-Chr6 12438363 12485729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0946 384 679 MAP Kinase Kinase Kinase AT3G13530 27.425 4.33e-27 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Vvi6g0946 Pkinase 3.3e-59 CL0016