Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0942 ATGCACAACTCCGCCATGATGGATCCTGAGTTAATCAGACTCGCGCAGGAACAGATGAATCGCATGTCTCCCACTGAATTCGCCAAGATCCAAGAACAGATGATGGCTAATCCCGAGTTGATGAGAATGGCCTCAGAAACCATGATGAACATGAGACCTGAAGACTTGAGAAATGCTGCAGAACAGTTGAAGTATGCCCGTCCAGAGGAGATGGCAGAGATTGGTGAGAAGATGGCTAATTCTTCACCTGAAGAGATAGCAGCAATGCGTGCCCGTGCTGATTCCCAGATCACTTACCAAATAAATGCAGCTCAGATGCTGAAAAAACAGGGGAATGAGCTTCATAATAAAGGAAAGTTCAATGAAGCCTCTCAGAAATATTTGCTAGCAAAGAAAAATCTAACAGGCATTCCTGCTTCCAAAGGAAGGACACTCCTGTTAGCATGCTCACTGAACTTGATGTCATGTTATTTGAAGACAAAGCAATATGATGAGTGCATACAGGAAGGCACTGAGGTTCTGGCATATGATCCAAAGAATGTCAAAGCTCTTTACAGGAGGGGTCAAGCATACAAGGAATTAGGACAATTAAACGATGCTGTCTCTGATTTAAACAAGGCATATGGAGTTTCCCCTGAAGATGAAACTATTGGAGAAGTCTTAAGGGATGTGAAGGAAAAATTAATAAAACAAGGTGGTGAGCCTGCACAGAGAAAATTGGTGATTGAAGAAATAACTGAAGAAGCTGTGTCAACTGGAAATGGAAAATGTTCTGCCATGGAAAACTGTGTTACACAACCACAGGAAAATGGTGCTTGCCGTAAGAGTCAAAGTGGGACCAACAGTGAGGATCTAACAACTAATTCAGAGTACTTGCAAACTTTGAAAGATGACCCTGAAGCTATCAGATCATTTCAGAATTTCATGTCTAATGCTGATCCTGATACTCTGGCTGCTTTAAGTGCTGGAAAATCTGGAGAGTATTCACCTGACATGTTTAAGACTGCCTCGAATATGATTAGCAAGATGTCACCTGAAGAACTTCAAAGAATGGTTCAGATGGCTTCCTCATTTCAAAGGGAAAACGAATATTTTCCAAAAGGTTCTTTAGACTCTAATTTTGGAAGCTTTAGACCTGGGTCGGTTCCTCCAAATTTGACACCAGAAATGCTTAAAACAGCAACAGATATGATGAATAATATGTCAACAGAAGAGCGCCAGAAAATGTTGGAAATGGCTTCTTCTTTGAGAGCTAGAGATTCAGTTTCTACCCCAGCTTCTTTAAATACTGATGGACTAAGTTCAAAATTCCCAGAGACCCGAGAAAATTCTGCTGTTAATGGAAATAATGATATGGGTGAAAGTAGTTCTCATGGTTCATTTTCAAATTTGAGAGGTGGTTCTCAGTCCAGTTTTCAACCTTCAACTGCTGGCATGCAAGAACAAATGAGAAACCAAATGAAAGATCCAGCCATGCGGCAGATGTTCACATCAATGATTAAGAATATGAGTCCAGAAATGATGACAAATATGGGTGAACAGTTTGGAGTTAAGCTTTCTCGAGAAGATGCGGAAAAAGCCCAACAAGCCCTCTCATCTATAACACCTGAGAACTTGGATAGAATGATGCGTTGGGCTGATGGGATTCAAAAAGGAGCCGAACGAGCCAGGAAGGCAAAGAATTGGCTGTTAGGAAAACCTGGTATGATCCTAGCAATATGCATGCTCATTTTAGCAATTATTCTTCACCGGCTGGGCTACATTGGCAGTTAG 1773 0.414 MHNSAMMDPELIRLAQEQMNRMSPTEFAKIQEQMMANPELMRMASETMMNMRPEDLRNAAEQLKYARPEEMAEIGEKMANSSPEEIAAMRARADSQITYQINAAQMLKKQGNELHNKGKFNEASQKYLLAKKNLTGIPASKGRTLLLACSLNLMSCYLKTKQYDECIQEGTEVLAYDPKNVKALYRRGQAYKELGQLNDAVSDLNKAYGVSPEDETIGEVLRDVKEKLIKQGGEPAQRKLVIEEITEEAVSTGNGKCSAMENCVTQPQENGACRKSQSGTNSEDLTTNSEYLQTLKDDPEAIRSFQNFMSNADPDTLAALSAGKSGEYSPDMFKTASNMISKMSPEELQRMVQMASSFQRENEYFPKGSLDSNFGSFRPGSVPPNLTPEMLKTATDMMNNMSTEERQKMLEMASSLRARDSVSTPASLNTDGLSSKFPETRENSAVNGNNDMGESSSHGSFSNLRGGSQSSFQPSTAGMQEQMRNQMKDPAMRQMFTSMIKNMSPEMMTNMGEQFGVKLSREDAEKAQQALSSITPENLDRMMRWADGIQKGAERARKAKNWLLGKPGMILAICMLILAIILHRLGYIGS* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0942 590 Gene3D Tetratricopeptide repeat domain 92 237 IPR011990 GO:0005515
Vvi6g0942 590 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 6 368 - -
Vvi6g0942 590 SMART tpr_5 181 214 IPR019734 GO:0005515
Vvi6g0942 590 SMART tpr_5 147 180 IPR019734 GO:0005515
Vvi6g0942 590 SMART tpr_5 104 137 IPR019734 GO:0005515
Vvi6g0942 590 SUPERFAMILY TPR-like 98 225 IPR011990 GO:0005515
Vvi6g0942 590 ProSiteProfiles TPR repeat profile. 181 214 IPR019734 GO:0005515
Vvi6g0942 590 MobiDBLite consensus disorder prediction 418 481 - -
Vvi6g0942 590 Pfam Tetratricopeptide repeat 182 214 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0942 100 228 Calmodulin-binding Proteins AT5G48570 35.556 2.56e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0942 - - vvi:100249682 1150.58