Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0940 ATGGAGGCTCCAGGTATGGAAGAGAGCAACAAGTCCGAGTGCCATTTGACTTCTGCTGCGGCTTTTGTGGAGGGTGGAATTCAAGAGGCCTGTGATGATGCTTGCAGCATATGCTTGGAAGCCTTCTGTGACAGTGATCCCTCGACGGTGACTAGTTGCAAGCATGAATTTCATCTTCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTATCAGCCTGAAGGATCCAACCAGCCAGGAATTGCTTGAGGCAGTGGAACGGGAGAGAACATTTCGGTTTAATCCATCTAGAAATGCCACAATATTTCATCATCCAACTTTGGGGGATTTCGAATTACAACATTTACCTGTGGGTGCGAATGATGCTGAACTTGAAGAGCGTATAATCCAGCACTTAGCTGCTGCAGCTGCAATGGGCAGAGCACGCCACATTGCTAGAAGGGAAGGCCAGAGAACTAGGTCATCAGCTCAAGGTCGTCCACAATTTCTGGTGTTCTCAGCTCATCCTAGCACGCCTCAGGCTGGTCCTGCTTCTTCCTCTCCAGCTCAGAGAGGGGAAGATGAACCAGCTCCTGCAATTACTGCTGCTATGCCCTCTTCCCTTCCTACAGCTGTGGGGGAAGAATCTTCTCGGCTTACTACATCACAACTTTCTTCCCAAGCCGAGGAAATTACTGCCTCAGCATCTGGGTCAATTATTCATACTACAAATCAGCATGGAACTTCCTCAAACAATAGGAGGTCTCCCGGTCAATCTCTTCCAAGTGGTCAAGATAAAGCAGGACCATCAGAATTTCAATCATTTTCAGAAACCCTAAAATCTCGATTTAATGCAGTGTCAATGAGGTACAAAGAGTCAATTTCGAAGAGTACAAGGGGATGGAAGGAGAGATTGTTCTCTCGCAATACTTCCATGGCAGATATTGGTTCTGATGTTAGAAGAGAGGTTAATGCAGGAATTGCAACTGTATCACGCATGATGGAGCATCTTGAAACTCGTGACAATAGCAGAACCACCCCTTCTTCTGTATCAGATAGTTCAGAGGATACCTCATCTCCATCACTGGGCGACCAGAGAATGGCTGAAACTAGTGCTCATAATCCTTTGGGTGACACTAATGTACAAGCTTCATGTGCTGCAAGTTCTGGCACTAATTAA 1182 0.4679 MEAPGMEESNKSECHLTSAAAFVEGGIQEACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERTFRFNPSRNATIFHHPTLGDFELQHLPVGANDAELEERIIQHLAAAAAMGRARHIARREGQRTRSSAQGRPQFLVFSAHPSTPQAGPASSSPAQRGEDEPAPAITAAMPSSLPTAVGEESSRLTTSQLSSQAEEITASASGSIIHTTNQHGTSSNNRRSPGQSLPSGQDKAGPSEFQSFSETLKSRFNAVSMRYKESISKSTRGWKERLFSRNTSMADIGSDVRREVNAGIATVSRMMEHLETRDNSRTTPSSVSDSSEDTSSPSLGDQRMAETSAHNPLGDTNVQASCAASSGTN* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0940 393 MobiDBLite consensus disorder prediction 344 393 - -
Vvi6g0940 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 90 IPR013083 -
Vvi6g0940 393 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Vvi6g0940 393 MobiDBLite consensus disorder prediction 174 188 - -
Vvi6g0940 393 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 18 84 - -
Vvi6g0940 393 MobiDBLite consensus disorder prediction 209 274 - -
Vvi6g0940 393 SMART ring_2 35 75 IPR001841 -
Vvi6g0940 393 MobiDBLite consensus disorder prediction 337 393 - -
Vvi6g0940 393 SUPERFAMILY RING/U-box 27 83 - -
Vvi6g0940 393 MobiDBLite consensus disorder prediction 211 274 - -
Vvi6g0940 393 FunFam E3 ubiquitin-protein ligase RHF2A 6 109 - -
Vvi6g0940 393 Pfam Ring finger domain 34 75 IPR001841 -
Vvi6g0940 393 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0940 Vvi-Chr6 12277807 12283130 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0940 32 83 C3H Transcription Factor Family AT4G00335 44.231 4.87e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0940 K19043 - vvi:100254749 750.74