Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0939 ATGGAAGCAACACAGAGGATAGCCTGCAATGCGGACTTAATTAACCCACTGTTTACAATGGGCATACAGGTCTCCTGCGTTCTTGTCCTCTCTCACTTCTTTCACCTTGTCTTGAAGCCTCTCGGTCAACCCGGACCCATCGCTCAGATTCTCGCGGGGGTGGTGATAGGTCCCTCAGCGTTGTCAAAAATAGGCGTTGTAAAGAAGACATTTCATAGTTCTTCCGAGGATTACTATCAAATTTTGGGATTATTTAGCCGTATATTTTTTATGTTCCTGATTGGCCTCCAACTGGACCTTCCTTATGCCATGCGCAACATACGGCGAGTAGGCACTGTTGCGCTTGGGGGTGCCATAACGTGTAGTGTGTTTGGTGCTGCTGTCTCCTTGTTTCTATATGATGTACTGGAAATCAAGGGCAGCAAGTTCTTATTTGCCCTTGCCTTGATGATTATTATAACTAATGCAGCCTCACCAGTCGCAATTCGTTTGGCAGTTGACTATAAGCTGGCAACTTCAGATGTGGGCCGACTTGTCATATCTTCTTCCTTGATCAATGACATTTGTTGTGCCTTACTCGTGTGTTTAATGAGCATTTTTTCTGCAGCATCTTCTAAAATAGGGGGAAAGATACGAAATGGTTTCCTTTGCCTCATACTCGTCGGGGTGGTTGTCATTCTCAACAAGCATTTATCTTTATGGTTAAACAAAAGGAACCGAAACCTGAAGCACCTAAAGAACACCGAATTCTTCTGCGTATTGTCACTCATAGTAGCAACAGCAATGTTTATTGAATGGAGCGGATATAGCAGCATAGTGAGTTGCTTTCTGATGGGTATGATGTACCCCAGGGAAGGAAAAACAGCTCGAACCCTGATGCACAAACTATCCTACTCTATTCACACCTTTGTACTTCCAGTTTACTTTGGCTACACAGGGTTCCAGGTAGATCTAGGACATCTGAAGAGTTTAGAAAATGCCGAAATTGTTGGTGCCATCGTCTTGTTAAGCATTGGTGGCAAGATTACTGGCACCCTTGGTGCTTGCCGGAGCCTAAACATTCCAGTGACACAGGGAGTTGTTCTTGCCTTCCTACTGAACGTGAAGGGCAATGTAGATCTTGTCCTGGTGGGCAGTGCCGTACAGAACTATAAATGGAGTGCGAAAGCTAACAATCTGCTTCTAATTACAATAATGATTAACACAGTTATAGTGGGGCCAGTTGTGGCTCTCATAGTGAGTAGAGAAACAAAATCTTTTGGTTACTGTCATGTACCGTTTGAACGACAAGACCCAGAGAGGGAGCTACGAATCCTGGCCTGTGTGCATGGCCCTCGTCATGTACCCACCATGGCTAGGATAATCCAATCATCAAATGGGGCTCAAAGCACGCCCATCTCCCCCTTCTTGATGCACCTCATCGAACTTCCTGAGAAGACCAAAACCAATTTGATGTATAATCAACTGCAAGATGATGAGCTGAGTGATGATGATGACTATGGGGGGAATGATGTGGTAGAGATCAATGACATAGTGGATGCCTTCTTCGCTGAGACAGGAATCATGACCCGTCAGCTCAAAGTTGTATCACCCTTTGCAACAATGTACGAGGAGGTGTGCAATGGTGCTGAGGATTTACGAGCATCAATCATACTCCTCCCTTTCCACAAGCACCAGAGAATTGATGGGAAAATGGAGAGTGGCAAGGAAGGCGTAAGGATCACCAACCAAAAGGTTCTTCGCCATGCAACATGCACTGTCGCCATCCTGGTCGACCGAGGTTTTTGGCTTGTTGGAGCCCCACAAGGACTGGGCTTTGAAGTACCTCAACATGTTGCAATTCTGTTCTTTGGAGGTCCTGATGATCGCGAGGCATTAGCATATGGTAGGAGTATGGGCATGCATCCTCATGTCAATCTCACCGTCATCAGGTTCCTGCCTGAATCATCAAAGGATCATGACGCGGGAATGAGAATTGCATCATATAGGGATGAGGTCTTAATGTCCATACCTGGCCGTGAGAACGAGAACGAGGAAGACAATGCCTTCCTAGCAAACTTCTATAACAGGTATGTGACATCGGGCCGAGTGGGGTATGTAGAGAAGTACGTTGATAACGGGGAACAAACAGTGAATGCTCTAAGGCAGATGGGGGACATGTACTCCTTGTTTATAGTGGGGAAAGGAGGGCGAGGACAGTGTCCTATAACGATCGGAATGAGCGACTGGGAAGAGTGTCCGGAGCTTGGGACTGTTGGGGATCTTTTGGCTTCTGCGGACTTTGATGGTTCGGTTTTGGTCATTCAACAGCATAGACATCAGAAGATAGAGCTTACTGAGGATTGA 2346 0.4612 MEATQRIACNADLINPLFTMGIQVSCVLVLSHFFHLVLKPLGQPGPIAQILAGVVIGPSALSKIGVVKKTFHSSSEDYYQILGLFSRIFFMFLIGLQLDLPYAMRNIRRVGTVALGGAITCSVFGAAVSLFLYDVLEIKGSKFLFALALMIIITNAASPVAIRLAVDYKLATSDVGRLVISSSLINDICCALLVCLMSIFSAASSKIGGKIRNGFLCLILVGVVVILNKHLSLWLNKRNRNLKHLKNTEFFCVLSLIVATAMFIEWSGYSSIVSCFLMGMMYPREGKTARTLMHKLSYSIHTFVLPVYFGYTGFQVDLGHLKSLENAEIVGAIVLLSIGGKITGTLGACRSLNIPVTQGVVLAFLLNVKGNVDLVLVGSAVQNYKWSAKANNLLLITIMINTVIVGPVVALIVSRETKSFGYCHVPFERQDPERELRILACVHGPRHVPTMARIIQSSNGAQSTPISPFLMHLIELPEKTKTNLMYNQLQDDELSDDDDYGGNDVVEINDIVDAFFAETGIMTRQLKVVSPFATMYEEVCNGAEDLRASIILLPFHKHQRIDGKMESGKEGVRITNQKVLRHATCTVAILVDRGFWLVGAPQGLGFEVPQHVAILFFGGPDDREALAYGRSMGMHPHVNLTVIRFLPESSKDHDAGMRIASYRDEVLMSIPGRENENEEDNAFLANFYNRYVTSGRVGYVEKYVDNGEQTVNALRQMGDMYSLFIVGKGGRGQCPITIGMSDWEECPELGTVGDLLASADFDGSVLVIQQHRHQKIELTED* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0939 781 Gene3D - 19 420 IPR038770 -
Vvi6g0939 781 PANTHER CATION/H + ANTIPORTER 16 773 - -
Vvi6g0939 781 FunFam Cation/H(+) antiporter 1 19 422 - -
Vvi6g0939 781 Pfam Sodium/hydrogen exchanger family 27 413 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0939 Vvi-Chr6 12257670 12260421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0939 13 773 Antiporter Super Family AT1G16380 43.372 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0939 - - vvi:100261493 1498.41